Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_K18
(456 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi... 193 4e-50
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi... 190 4e-49
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi... 188 1e-48
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim... 40 0.001
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 28 2.6
At3g05630.1 68416.m00626 phospholipase D, putative (PLDP2) ident... 28 3.4
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 27 4.5
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 27 4.5
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila... 27 4.5
At3g09780.1 68416.m01161 protein kinase family protein contains ... 27 6.0
At1g04390.1 68414.m00429 expressed protein 27 6.0
At4g36980.1 68417.m05240 expressed protein 27 7.9
At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)... 27 7.9
>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
Length = 209
Score = 193 bits (471), Expect = 4e-50
Identities = 88/142 (61%), Positives = 105/142 (73%)
Frame = +3
Query: 30 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 209
M SLK+QKRLAASVM+CGK KVWLDPNE +I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 210 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 389
+R R EA+RKGRH G+GKR+GT AR+P K LW +KKIDRH+Y
Sbjct: 61 SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120
Query: 390 HSLYMKAKGNVFKNKRVLMEYI 455
H +YMK KGNVFKNKRVLME I
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESI 142
>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
to L19 from several species
Length = 208
Score = 190 bits (463), Expect = 4e-49
Identities = 86/142 (60%), Positives = 106/142 (74%)
Frame = +3
Query: 30 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 209
M SLKLQKRLA+SV++CGK+KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 210 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 389
+R R+ A+RKGRH G+GKR+GT AR+P K LW KKIDRH+Y
Sbjct: 61 SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120
Query: 390 HSLYMKAKGNVFKNKRVLMEYI 455
H +YMK KGNVFKNKRVLME I
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESI 142
>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
to ribosomal protein L19 GI:36127 from [Homo sapiens]
Length = 214
Score = 188 bits (459), Expect = 1e-48
Identities = 86/142 (60%), Positives = 104/142 (73%)
Frame = +3
Query: 30 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 209
M SLKLQKRLAASVM+CGK KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 210 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 389
+R RK A+ KGRH G+GKR+GT AR+P K LW KKID+H+Y
Sbjct: 61 SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120
Query: 390 HSLYMKAKGNVFKNKRVLMEYI 455
H +YM+ KGNVFKNKRVLME I
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESI 142
>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
similar to 60S ribosomal protein L19-3
(Swiss-Prot:P49693) [Arabidopsis thaliana]
Length = 101
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/29 (62%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Frame = +3
Query: 366 KKIDRHLY-HSLYMKAKGNVFKNKRVLME 449
KKID+ +Y H ++MK KG V+KNK VLME
Sbjct: 29 KKIDKLVYYHDMFMKVKGKVYKNKCVLME 57
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 168 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 287
D + KK + + + ++RKN + RR+G G G RR A+
Sbjct: 77 DVIYWKKLLELENSGKIRKNPKPRRRGDKSGDGFRRTGAD 116
>At3g05630.1 68416.m00626 phospholipase D, putative (PLDP2)
identical to SP|Q9M9W8 Phospholipase D p2 (EC 3.1.4.4)
(AtPLDp2) (Phospholipase D2 PHOX and PX containing
domain) (Phospholipase D zeta 2) (PLDzeta2) {Arabidopsis
thaliana}; similar to phospholipase D GB:BAA24577 from
[Rattus norvegicus]; contains Pfam profile: PF00614
phospholipase D, PF00169 PH domain, PF00787 PX domain
Length = 1046
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = -2
Query: 215 TSAGMDSNWFLDDQTILDHLTDVLSGISISDFIDLVWIKPHLF 87
TS G + WF+D T + + + + F+ W+ P L+
Sbjct: 359 TSDGSQAQWFVDGHTAFEAIAFAIQNATSEIFMTGWWLCPELY 401
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 204 SRARVRKNTEARRKGRHCGFGKRRGTANARMPQKEL 311
SR+R R + +R +GR + R + ++ P+K+L
Sbjct: 209 SRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDL 244
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 27.5 bits (58), Expect = 4.5
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3
Query: 363 AKKIDRHLYHSLYMKAKGNVFKNKRVL 443
A K+++ +Y Y KAKG + KN+RVL
Sbjct: 870 AGKVEK-IYDLAYEKAKGMLLKNRRVL 895
>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
{Mus musculus}
Length = 865
Score = 27.5 bits (58), Expect = 4.5
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 168 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGT 281
D L++ H R+ VR+ R +GR G G RRG+
Sbjct: 816 DELLLSLVEVKHGRSFVRRGGRGRGRGRGRGRGGRRGS 853
>At3g09780.1 68416.m01161 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 775
Score = 27.1 bits (57), Expect = 6.0
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 453 CTP*GHACS*THYPSPSCTRNGRDACLSSSL 361
C+P G CS + S SCT N C SL
Sbjct: 381 CSPCGSDCSHGFFLSSSCTANSDRICTPCSL 411
>At1g04390.1 68414.m00429 expressed protein
Length = 849
Score = 27.1 bits (57), Expect = 6.0
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 15 SHRARMSSLKLQKRLAASVMRCGK 86
S AR+ LKL +RLAA+V GK
Sbjct: 270 SQNARIEGLKLAQRLAATVRTMGK 293
>At4g36980.1 68417.m05240 expressed protein
Length = 560
Score = 26.6 bits (56), Expect = 7.9
Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Frame = +3
Query: 27 RMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAV-H 203
R+ + +L K++ KK + + ++A T+ R+ + + + P H
Sbjct: 439 RIMNKQLTKQIKKDSATETAKKREQERQRLEKLAETSRLSRNRQRSRSRSISRSPPPRRH 498
Query: 204 SRARVRKNTEARRKGRHCGFGKRRGTAN--ARMPQK 305
R+R R + +RR RH + R + +R P++
Sbjct: 499 RRSRSRSGSRSRRSRRHSSRSRSRSPSRSLSRSPKR 534
>At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)
family protein low similarity to Swift [Xenopus laevis]
GI:14164561; contains Pfam profiles PF00583:
acetyltransferase, GNAT family, PF00533: BRCA1 C
Terminus (BRCT) domain
Length = 991
Score = 26.6 bits (56), Expect = 7.9
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 27 RMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDG 173
+ S+ L++ AS+ K++ + N +EIA T+ Q+ K KDG
Sbjct: 248 KCSTPGLKRSWEASLSSLQSKRIRANNNNNSEIAKTDLAQSSAKQSKDG 296
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,072,226
Number of Sequences: 28952
Number of extensions: 192219
Number of successful extensions: 559
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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