Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K17
         (460 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    26   0.19 
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   3.2  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   4.2  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      20   9.6  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 25.8 bits (54), Expect = 0.19
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 203 PILGAKEDVAPTSPPT 156
           PIL  K  V+PT+PPT
Sbjct: 85  PILAEKVSVSPTTPPT 100


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 254 VALAMSSPTFFGERPRGPILGAKEDVAPTSPPT 156
           + + +S+PT FG R     L    DV P +  T
Sbjct: 166 IGVQISAPTIFGARHGLETLSQLMDVYPNNDGT 198


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 176 LRPPWLLKSVPLVSPQKRLVMTSLK 250
           +RPP L  + P+ +PQ ++  T  K
Sbjct: 101 IRPPILHDTQPMCNPQLQVPRTFFK 125


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 6/12 (50%), Positives = 6/12 (50%)
 Frame = +3

Query: 408 WKYPNGRCHWHC 443
           W Y   R H HC
Sbjct: 84  WVYYESRAHIHC 95


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,823
Number of Sequences: 336
Number of extensions: 2170
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10511300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)