Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K17
         (460 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...   184   8e-48
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...   184   8e-48
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    27   1.0  
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ...    26   3.2  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   5.6  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   5.6  
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe...    25   7.3  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   7.3  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    25   7.3  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    24   9.7  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    24   9.7  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  184 bits (447), Expect = 8e-48
 Identities = 80/117 (68%), Positives = 102/117 (87%)
 Frame = +1

Query: 106 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 285
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60

Query: 286 QLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQKNIKHNGNIPMEDVIGIAQIMR 456
           +L +QNRQA +SVVPSA+AL+I+ALKEP RDRKK KN+ H+GN+ ++++I +A+ MR
Sbjct: 61  KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMR 117


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  184 bits (447), Expect = 8e-48
 Identities = 80/117 (68%), Positives = 102/117 (87%)
 Frame = +1

Query: 106 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 285
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60

Query: 286 QLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQKNIKHNGNIPMEDVIGIAQIMR 456
           +L +QNRQA +SVVPSA+AL+I+ALKEP RDRKK KN+ H+GN+ ++++I +A+ MR
Sbjct: 61  KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMR 117


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -3

Query: 200 ILGAKEDVAPTSPPTHLKLTILISLGSNLGGIVLTNYCNNKSLYNNSKPM 51
           I+   + ++ T+ PTHL    L    SN+         NNK+  N+SKP+
Sbjct: 449 IMDLTQPISSTNAPTHLNEDDLNQFTSNISSSSKPRKDNNKTA-NSSKPI 497


>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 355 ALKEPPRDRKKQKN-IKHNGNIPMEDVIG 438
           A+ +PP  +KK+KN  K   N P E  +G
Sbjct: 30  AITKPPASKKKRKNRKKKKNNGPSEQFVG 58


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 125 GSNLGGIVLTNYCNNKSLYNNSKPMNLDIKGVQPSK 18
           GS + G+VL+N    K        + LD+  VQ  K
Sbjct: 92  GSQVAGLVLSNRSGLKGREPKKSQLGLDVLAVQKKK 127


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 138 NRQLKMCWWRSRCYVLLGS*NRSPWSLPKK 227
           NR    C    R Y+  G  NRSPW++ +K
Sbjct: 286 NRLPMHCRDHWRDYIQPGEINRSPWTIQEK 315


>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 551

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +2

Query: 185 PWLLKSVPLVSPQ 223
           PW +K++PLV+P+
Sbjct: 462 PWNIKNIPLVTPE 474


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 449 IWAMPMTSSIGIFPLCL 399
           +WA+ +  SIGIFP  L
Sbjct: 519 VWAVDLALSIGIFPYVL 535


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 213 TKGTDFRSQGGRSTDFSTN 157
           T G D  S GGR+ D+ST+
Sbjct: 118 TGGNDSYSSGGRNEDYSTS 136


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 146 LTILISLGSNLGGIVLTNYCNNKSLYNNSKPMNLD 42
           L++ I      GG+V    C +  + N  K  NLD
Sbjct: 693 LSLGIDAAKRAGGVVEATMCYSGDMLNPKKKYNLD 727


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -3

Query: 209 RGPILGAKEDVAPTSPPTHLKLTILISLGSNLGGIVLTNYCNNKSLYNNSKPMNLD 42
           R   LG+K+ +  + PP H  L+  + + S  G    +    N+S  ++S  M  D
Sbjct: 268 RSVSLGSKDYLKSSHPPVHKTLSQSVLVLSKDGNASSSGGTENQSANSSSSLMEKD 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,826,984
Number of Sequences: 5004
Number of extensions: 33864
Number of successful extensions: 112
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)