Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_K17
(460 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.) 207 3e-54
SB_22058| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.35
SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05) 30 1.1
SB_57115| Best HMM Match : HALZ (HMM E-Value=7.6) 29 1.8
SB_56062| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_23193| Best HMM Match : Lipoprotein_17 (HMM E-Value=2.3) 29 1.8
SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1) 29 1.8
SB_15149| Best HMM Match : HALZ (HMM E-Value=7.6) 29 1.8
SB_58285| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_53864| Best HMM Match : Herpes_US9 (HMM E-Value=2) 28 3.2
SB_28159| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_43217| Best HMM Match : NUMOD3 (HMM E-Value=0.56) 28 4.3
SB_34911| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_34579| Best HMM Match : IncA (HMM E-Value=0.99) 27 5.6
SB_32366| Best HMM Match : Kinesin (HMM E-Value=0) 27 5.6
SB_16971| Best HMM Match : zf-C2H2 (HMM E-Value=5.8e-36) 27 5.6
SB_9681| Best HMM Match : IncA (HMM E-Value=0.58) 27 5.6
SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36) 27 5.6
SB_34694| Best HMM Match : IncA (HMM E-Value=0.33) 27 7.5
SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_26153| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_42549| Best HMM Match : Peptidase_A17 (HMM E-Value=1e-35) 27 9.9
SB_56403| Best HMM Match : fn3 (HMM E-Value=1.5e-29) 27 9.9
SB_29133| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_7181| Best HMM Match : C2 (HMM E-Value=1.2e-15) 27 9.9
>SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 207 bits (506), Expect = 3e-54
Identities = 95/118 (80%), Positives = 108/118 (91%)
Frame = +1
Query: 106 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 285
MPPKFDPNEI+ V LRC GGEVGAT+SLAPKIGPLGLSPKKVGDDIAKAT DWKGLKITV
Sbjct: 1 MPPKFDPNEIQYVYLRCTGGEVGATASLAPKIGPLGLSPKKVGDDIAKATQDWKGLKITV 60
Query: 286 QLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQKNIKHNGNIPMEDVIGIAQIMRP 459
L +QNRQA++SVVPSA++LII+ALKEPPRDRKK KNIKHNGNI ++DV +A++MRP
Sbjct: 61 CLTIQNRQAKVSVVPSASSLIIKALKEPPRDRKKVKNIKHNGNITLDDVTNVAKVMRP 118
>SB_22058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 31.5 bits (68), Expect = 0.35
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = -3
Query: 203 PILGAKEDVAPTSPPTHLKLTILISLGSNLGGIVLTNYCNNKSLY 69
PIL AK+ + PT PP +LT ++ G+ G T +CN +Y
Sbjct: 121 PILPAKKLIYPTPPPNFRRLTGGLTQGNESG----TPFCNQNRVY 161
>SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05)
Length = 302
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 274 KITVQLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQKNIKH 405
++ ++ + RQ + +PSA IR +E PR +K N+KH
Sbjct: 97 RVIIRAVGSRRQVEPLPLPSALKEWIREYEEEPRFDRKLTNLKH 140
>SB_57115| Best HMM Match : HALZ (HMM E-Value=7.6)
Length = 209
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 371 GGSLRALMISAAAEGTTEICACLFCTIN 288
GG L+ L++S G T ACL+C ++
Sbjct: 59 GGDLKFLLLSMGLSGATSDYACLWCIVH 86
>SB_56062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 371 GGSLRALMISAAAEGTTEICACLFCTIN 288
GG L+ L++S G T ACL+C ++
Sbjct: 459 GGDLKFLLLSMGLSGATSDYACLWCIVH 486
>SB_23193| Best HMM Match : Lipoprotein_17 (HMM E-Value=2.3)
Length = 711
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 371 GGSLRALMISAAAEGTTEICACLFCTIN 288
GG L+ L++S G T ACL+C ++
Sbjct: 459 GGDLKFLLLSMGLSGATSDYACLWCIVH 486
>SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)
Length = 2568
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +1
Query: 166 EVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQLIVQNRQAQISVVPS 333
E+G T + + LG PK V +D +DW + I + I++ PS
Sbjct: 1793 ELGITDAEGNYVDSLGADPKAVSNDYVGYATDWVNNNLPENAITNSTWTGIALGPS 1848
>SB_15149| Best HMM Match : HALZ (HMM E-Value=7.6)
Length = 328
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 371 GGSLRALMISAAAEGTTEICACLFCTIN 288
GG L+ L++S G T ACL+C ++
Sbjct: 59 GGDLKFLLLSMGLSGATSDYACLWCIVH 86
>SB_58285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 547
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -3
Query: 431 TSSIGIFPLCLMFF-CFLRSRGGSLRALMISAAAEGTTEICACLFCTINWT 282
+ S + CL+ F CF RG +L+ ++ C +FC WT
Sbjct: 435 SKSAHVNAFCLLHFTCFHPYRGKTLKTARLTVVQGRGRSCCKPVFCARRWT 485
>SB_53864| Best HMM Match : Herpes_US9 (HMM E-Value=2)
Length = 615
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -3
Query: 200 ILGAKEDVAP-TSPPTHLKLTILISLGSNLGGIVLTNYCNNKSLYNN 63
+ + DV P T P TH+ T S+G ++ L C+ +++ +N
Sbjct: 397 VAASSSDVCPPTRPQTHMTPTAPASIGGDVQSFRLQKICDTQAVLDN 443
>SB_28159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 491
Score = 27.9 bits (59), Expect = 4.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 202 GPLGLSPKKVGDDIAKATSDWKG 270
GPLG+ +++ D ++SDW G
Sbjct: 337 GPLGMEDRRIQDSQINSSSDWDG 359
>SB_43217| Best HMM Match : NUMOD3 (HMM E-Value=0.56)
Length = 311
Score = 27.9 bits (59), Expect = 4.3
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Frame = -3
Query: 284 TVILRPFQSLVALAMSSPTFFGERPRGPI-LGAKEDVAPTSPPTHLKLTILISLGSNLGG 108
T L P +AL F L AKE P TH+ T S+G ++
Sbjct: 82 TAKLDPLTGKIALVSKGVAFLNAELCALFGLEAKETAGVCPPQTHMTPTAPASIGGDVQS 141
Query: 107 IVLTNYCNNKSLYNN 63
L C+ +++ +N
Sbjct: 142 FRLQKICDTQAVLDN 156
>SB_34911| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 904
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 383 LRSRGGSLRALMISAAAEGTTEICACLFCTINWTVILRP 267
+R +G SL++L+ + IC CL C I+ V+ P
Sbjct: 175 IRYKGKSLKSLIARGLIKVHPPICDCLGCRISSPVVASP 213
>SB_34579| Best HMM Match : IncA (HMM E-Value=0.99)
Length = 346
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -3
Query: 173 PTSPPTHLKLTILISLGSNLGGIVLTNYCNNKSLYNN 63
PT P TH+ T S+G ++ L C+ +++ +N
Sbjct: 138 PTRPQTHMTPTAPASIGGDVQSFRLQKICDTQAVLDN 174
>SB_32366| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 1492
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Frame = -2
Query: 297 HYQLDRDLETLPVTSGFSDVITNL-----FWGETKGTDFRSQGGRSTDFSTNTS 151
+Y + +PVT F D + N WG+ KG R G ++ NT+
Sbjct: 741 NYNFTKMFSFVPVTKQFQDYLVNSNLVIEVWGKQKGRKSRKPGAPASSQQKNTA 794
>SB_16971| Best HMM Match : zf-C2H2 (HMM E-Value=5.8e-36)
Length = 477
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -3
Query: 173 PTSPPTHLKLTILISLGSNLGGIVLTNYCNNKSLYNN 63
PT P TH+ T S+G ++ L C+ +++ +N
Sbjct: 21 PTRPQTHMTPTAPASIGGDVQSFRLQKICDTQAVLDN 57
>SB_9681| Best HMM Match : IncA (HMM E-Value=0.58)
Length = 215
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -3
Query: 173 PTSPPTHLKLTILISLGSNLGGIVLTNYCNNKSLYNN 63
PT P TH T S+G ++ L C+ +++++N
Sbjct: 5 PTCPQTHTTPTAPASIGGDVQSFRLQKICDTQAVHDN 41
>SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36)
Length = 646
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 124 PNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVG 234
P+ +L+C G E TSS+ P +G LG K G
Sbjct: 597 PSMTNTTSLKCQGDEKSGTSSITP-LGSLGTYDKSHG 632
>SB_34694| Best HMM Match : IncA (HMM E-Value=0.33)
Length = 404
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 200 ILGAKEDVA-PTSPPTHLKLTILISLGSNLGGIVLTNYCNNKSLYNN 63
+ + DV PT P TH T S+G ++ L C+ +++ +N
Sbjct: 188 VAASSSDVCLPTCPQTHTTPTAPASIGGDVQSFRLQKICDTQAVLDN 234
>SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1027
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 200 ILGAKEDVA-PTSPPTHLKLTILISLGSNLGGIVLTNYCNNKSLYNN 63
+ + DV PT P TH T S+G ++ L C+ +++ +N
Sbjct: 188 VAASSSDVCLPTCPQTHTTPTAPASIGGDVQSFRLQKICDTQAVLDN 234
>SB_26153| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 298
Score = 27.1 bits (57), Expect = 7.5
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3
Query: 416 IFPLCLMFFCFLR 378
I PLC+M FC+LR
Sbjct: 199 IIPLCIMVFCYLR 211
>SB_42549| Best HMM Match : Peptidase_A17 (HMM E-Value=1e-35)
Length = 1595
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 331 SAAALIIRALKEPPRDRKKQKNIKHNGNI-PMEDVI 435
SAA +I R L+EP R+ Q N H+ + P+ D I
Sbjct: 200 SAAQVIQRILEEPDDPRENQSNNPHDQSTRPLSDKI 235
>SB_56403| Best HMM Match : fn3 (HMM E-Value=1.5e-29)
Length = 236
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = -3
Query: 203 PILGAKEDVAPTSPPTHLKLTILISLGSNLGGIVLTNYCNN 81
P +G + AP PT L T+L S + L C N
Sbjct: 130 PYIGRTREDAPDCAPTSLSTTVLTSTSIRVTWSALPGTCTN 170
>SB_29133| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 239
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -3
Query: 173 PTSPPTHLKLTILISLGSNLGGIVLTNYCNNKSLYNN 63
PT P TH T S+G ++ L C+ +++ +N
Sbjct: 21 PTCPQTHTTPTAPASIGGDVQSFQLQKICDTQAVLDN 57
>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4554
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 236 SPTFFGERPRGPILGAKEDVAP 171
S TF +P GP+ G K DVAP
Sbjct: 958 SGTFTAVQPDGPLRGEKLDVAP 979
>SB_7181| Best HMM Match : C2 (HMM E-Value=1.2e-15)
Length = 630
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -3
Query: 197 LGAKED--VAPTSPPTHLKLTILISLGSNLGGIVLTNYCNNKSLYNN 63
L AK+D P P TH+ T S+G ++ L C+ +++ +N
Sbjct: 112 LEAKDDHVCPPICPQTHMTPTAPASIGGDVQSFRLQKICDTQAVLDN 158
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,885,572
Number of Sequences: 59808
Number of extensions: 260105
Number of successful extensions: 836
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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