Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K17
         (460 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical pr...   197   4e-51
AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical ...    27   5.0  
AL021491-2|CAA16375.1|  319|Caenorhabditis elegans Hypothetical ...    27   8.7  
AF125459-4|AAD12839.1|  287|Caenorhabditis elegans Hypothetical ...    27   8.7  
AF125459-3|AAX88817.1|  277|Caenorhabditis elegans Hypothetical ...    27   8.7  
AF125459-2|AAX88818.1|  414|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical
           protein JC8.3a protein.
          Length = 165

 Score =  197 bits (480), Expect = 4e-51
 Identities = 88/118 (74%), Positives = 106/118 (89%)
 Frame = +1

Query: 106 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 285
           MPPKFDP EIKIV LRCVGGEVGATS+LAPK+GPLGLSPKK+G+DIAKAT DWKGLK+T 
Sbjct: 1   MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTC 60

Query: 286 QLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQKNIKHNGNIPMEDVIGIAQIMRP 459
           +L +QNR A+I VVPSAA+LI++ LKEPPRDRKK KN+KHNG++ ++ +I IA+IMRP
Sbjct: 61  KLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRP 118


>AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical
           protein C36C9.1 protein.
          Length = 832

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
 Frame = -3

Query: 245 AMSSPTFFGERPRGPILGAKEDVAPTSPPTHL--KLTILISLGSNLGGIVLTNYCNNKSL 72
           A S P     +   P   + +D  PTSPP  +   LT  +    +    +  +Y     L
Sbjct: 630 ATSQPAPLPCKSANPTEDSSQDAPPTSPPPRISDSLTAFLEAQQDFNDYIDAHYKEKTQL 689

Query: 71  YNNSKPMNLDIKGVQPSK 18
                 +NL+I G+ P +
Sbjct: 690 LK----VNLNIHGMSPER 703


>AL021491-2|CAA16375.1|  319|Caenorhabditis elegans Hypothetical
           protein Y44A6B.3 protein.
          Length = 319

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 147 LKMCWWRSRCYVLLGS*N 200
           LK+C+W S C V+L S N
Sbjct: 47  LKICFWDSNCLVILDSEN 64


>AF125459-4|AAD12839.1|  287|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7b protein.
          Length = 287

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 19/38 (50%), Positives = 19/38 (50%)
 Frame = +1

Query: 157 VGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKG 270
           VGG VGATSS AP  G        V DD    TS  KG
Sbjct: 42  VGGSVGATSSAAPSGG--------VFDDSQSTTSTRKG 71


>AF125459-3|AAX88817.1|  277|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7a protein.
          Length = 277

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 19/38 (50%), Positives = 19/38 (50%)
 Frame = +1

Query: 157 VGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKG 270
           VGG VGATSS AP  G        V DD    TS  KG
Sbjct: 32  VGGSVGATSSAAPSGG--------VFDDSQSTTSTRKG 61


>AF125459-2|AAX88818.1|  414|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7c protein.
          Length = 414

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 19/38 (50%), Positives = 19/38 (50%)
 Frame = +1

Query: 157 VGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKG 270
           VGG VGATSS AP  G        V DD    TS  KG
Sbjct: 32  VGGSVGATSSAAPSGG--------VFDDSQSTTSTRKG 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,237,841
Number of Sequences: 27780
Number of extensions: 195372
Number of successful extensions: 548
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)