Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K17
         (460 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S ...   182   1e-46
At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S ...   180   4e-46
At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)           180   4e-46
At5g61480.1 68418.m07714 leucine-rich repeat transmembrane prote...    29   2.0  
At3g55080.1 68416.m06117 SET domain-containing protein low simil...    28   2.6  
At4g02640.2 68417.m00359 bZIP transcription factor family protei...    27   6.1  
At4g02640.1 68417.m00358 bZIP transcription factor family protei...    27   6.1  
At1g71830.1 68414.m08301 leucine-rich repeat family protein / pr...    27   6.1  

>At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S
           RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana,
           PIR:T45883
          Length = 166

 Score =  182 bits (443), Expect = 1e-46
 Identities = 86/119 (72%), Positives = 104/119 (87%), Gaps = 1/119 (0%)
 Frame = +1

Query: 106 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 282
           MPPK DP++I  V +R  GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 283 VQLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQKNIKHNGNIPMEDVIGIAQIMRP 459
           V+L VQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKHNGNI  +DVI IA+IMRP
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRP 119


>At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S
           RIBOSOMAL PROTEIN L12, Prunus armeniaca,
           SWISSPROT:RL12_PRUAR
          Length = 166

 Score =  180 bits (438), Expect = 4e-46
 Identities = 85/119 (71%), Positives = 103/119 (86%), Gaps = 1/119 (0%)
 Frame = +1

Query: 106 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 282
           MPPK DP++I  V +R  GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 283 VQLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQKNIKHNGNIPMEDVIGIAQIMRP 459
           V+L VQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKHNGNI  +DV  IA+IMRP
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRP 119


>At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)
          Length = 166

 Score =  180 bits (438), Expect = 4e-46
 Identities = 85/119 (71%), Positives = 103/119 (86%), Gaps = 1/119 (0%)
 Frame = +1

Query: 106 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 282
           MPPK DP++I  V +R  GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 283 VQLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQKNIKHNGNIPMEDVIGIAQIMRP 459
           V+L VQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKHNGNI  +DV  IA+IMRP
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRP 119


>At5g61480.1 68418.m07714 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 1041

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 5/97 (5%)
 Frame = -3

Query: 458 GRIIWAMPMTSSIGIFPLCLMFFCFLRSRGGSLRALMISAAAEGTTEICACLFCTINWTV 279
           G I+W +     +G F L     CF +S G  +     +    G  ++ A  F  +N+T 
Sbjct: 654 GAIVWILAAAIGVGFFVLVAATRCFQKSYGNRVDGGGRNGGDIGPWKLTA--FQRLNFTA 711

Query: 278 -----ILRPFQSLVALAMSSPTFFGERPRGPILGAKE 183
                 L    +++ +  +   +  E P G I+  K+
Sbjct: 712 DDVVECLSKTDNILGMGSTGTVYKAEMPNGEIIAVKK 748


>At3g55080.1 68416.m06117 SET domain-containing protein low
           similarity to ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit N-methyltransferase
           I [Spinacia oleracea] GI:3403236; contains Pfam profile
           PF00856: SET domain
          Length = 463

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 11/48 (22%), Positives = 23/48 (47%)
 Frame = -2

Query: 246 SDVITNLFWGETKGTDFRSQGGRSTDFSTNTS*VDDFNFIRIKFRRHC 103
           +++ +++FWGE + +  R                 DF+F+   F++HC
Sbjct: 144 AEMHSSIFWGEDELSMIRCSAVHQETVKQKAQIEKDFSFVAQAFKQHC 191


>At4g02640.2 68417.m00359 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription
           factor; identical to cDNA bZIP protein BZO2H1,
           alternatively spliced GI:10954094
          Length = 417

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 163 GEVGATSSLAPKIGPLGLSPKKVGDDIAKATSD 261
           GE+G TSSL  ++   G+S K+V    ++  SD
Sbjct: 171 GELGVTSSLPAEVKKTGVSMKQVTSGSSREYSD 203


>At4g02640.1 68417.m00358 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription
           factor; identical to cDNA bZIP protein BZO2H1,
           alternatively spliced GI:10954094
          Length = 411

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 163 GEVGATSSLAPKIGPLGLSPKKVGDDIAKATSD 261
           GE+G TSSL  ++   G+S K+V    ++  SD
Sbjct: 165 GELGVTSSLPAEVKKTGVSMKQVTSGSSREYSD 197


>At1g71830.1 68414.m08301 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 625

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -3

Query: 206 GPILGAKEDVAPTSPPTHLKLTILISLGSNLGGIVLTNYCNNKSLYNNSKPMNL 45
           G +     +  P+ PP        I+LGS  G   L ++C+ K ++ + K  N+
Sbjct: 382 GSVASCLRERPPSQPPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANI 435


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,809,088
Number of Sequences: 28952
Number of extensions: 186981
Number of successful extensions: 564
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)