Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K16
         (401 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37831| Best HMM Match : MAM (HMM E-Value=0)                         30   0.61 
SB_8910| Best HMM Match : MAM (HMM E-Value=1.9)                        30   0.61 
SB_58168| Best HMM Match : Podoplanin (HMM E-Value=1.1)                28   3.3  
SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)                27   5.7  
SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  
SB_35110| Best HMM Match : LRR_1 (HMM E-Value=3.9e-09)                 26   10.0 
SB_32906| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   10.0 

>SB_37831| Best HMM Match : MAM (HMM E-Value=0)
          Length = 563

 Score = 30.3 bits (65), Expect = 0.61
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 100 GRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDI 210
           G  G + Q  QV + + GET + ++  V+G    GDI
Sbjct: 151 GNQGQRWQMAQVPINYTGETIQLLLEGVRGSDYTGDI 187


>SB_8910| Best HMM Match : MAM (HMM E-Value=1.9)
          Length = 89

 Score = 30.3 bits (65), Expect = 0.61
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 100 GRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDI 210
           G  G + Q  QV + + GET + ++  V+G    GDI
Sbjct: 22  GNQGQRWQMAQVPINYTGETIQLLLEGVRGSDYTGDI 58


>SB_58168| Best HMM Match : Podoplanin (HMM E-Value=1.1)
          Length = 506

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 104 RPSTFTTRARTLGLSILNYISSFEKYTRAPKL 9
           RP   T+R+RT+ +S ++++ S    TRAP +
Sbjct: 300 RPGDSTSRSRTVQISTVSHVVSRHLNTRAPPI 331


>SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 785

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -3

Query: 225 LEKGQDVSVADRSLHVPDDLTASLSDELHFDLSTLSL*SGAAEHFH 88
           L+   + ++ DR   + DDL  S  + +  D+S      G A H+H
Sbjct: 299 LKAAMNQNLHDRIWIISDDLATSAGEIVFHDVSVKGTFLGVAHHYH 344


>SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 475

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +2

Query: 92  KCSAAPDHRDSVLRSKWSSSERLAVRSSGT*RDLSATETS*PFSSRSVKPGDFDKGP 262
           K  +   H+D + + +WS      + SSGT R L   + S     +S +  D + GP
Sbjct: 357 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSAE--DAEDGP 411


>SB_35110| Best HMM Match : LRR_1 (HMM E-Value=3.9e-09)
          Length = 546

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 135 QSGVHRRD*PSDHQEREGTCPRRRHPD 215
           Q G H+ + P +H++R+    +  HP+
Sbjct: 328 QEGTHQTEQPKEHRKRKSRRAKHEHPN 354


>SB_32906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 770

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 150 RRD*PSDHQEREGTCP-RRRHPDPSRVGA*SQETSIKVLYPRLRLIMYQLSKFM 308
           +RD P D ++ E TC    R+ DP+       +TSI  L  R   ++  L + +
Sbjct: 293 KRDPPEDEEDEEDTCIFIVRNEDPAESYLLQVKTSIYALRSRTSFVIVDLIELL 346


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,589,953
Number of Sequences: 59808
Number of extensions: 214776
Number of successful extensions: 567
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)