Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K16
         (401 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03850.1 68418.m00356 40S ribosomal protein S28 (RPS28B) ribo...    66   6e-12
At3g10090.1 68416.m01209 40S ribosomal protein S28 (RPS28A) simi...    66   6e-12
At5g64140.1 68418.m08054 40S ribosomal protein S28 (RPS28C)            65   1e-11
At3g13180.1 68416.m01649 NOL1/NOP2/sun family protein / antiterm...    29   1.5  
At1g17360.1 68414.m02116 COP1-interacting protein-related simila...    29   1.5  
At5g20910.1 68418.m02483 zinc finger (C3HC4-type RING finger) fa...    27   3.5  
At2g41360.1 68415.m05105 F-box family protein similar to SKP1 in...    27   4.7  
At4g35500.2 68417.m05045 protein kinase family protein contains ...    26   8.2  
At4g35500.1 68417.m05044 protein kinase family protein contains ...    26   8.2  
At1g16330.1 68414.m01954 cyclin family protein similar to SP|P25...    26   8.2  

>At5g03850.1 68418.m00356 40S ribosomal protein S28 (RPS28B)
           ribosomal protein S28, Arabidopsis thaliana,
           EMBL:ATRP28A
          Length = 64

 Score = 66.5 bits (155), Expect = 6e-12
 Identities = 34/53 (64%), Positives = 42/53 (79%)
 Frame = +1

Query: 58  MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 216
           MD     A VVKV+GRTGS+GQ TQV+V+F  ++ R I+RNVKGPVR+GDILT
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRYIMRNVKGPVREGDILT 52


>At3g10090.1 68416.m01209 40S ribosomal protein S28 (RPS28A) similar
           to ribosomal protein S28 GB:P34789 [Arabidopsis
           thaliana]
          Length = 64

 Score = 66.5 bits (155), Expect = 6e-12
 Identities = 34/53 (64%), Positives = 42/53 (79%)
 Frame = +1

Query: 58  MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 216
           MD     A VVKV+GRTGS+GQ TQV+V+F  ++ R I+RNVKGPVR+GDILT
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRYIMRNVKGPVREGDILT 52


>At5g64140.1 68418.m08054 40S ribosomal protein S28 (RPS28C)
          Length = 64

 Score = 65.3 bits (152), Expect = 1e-11
 Identities = 33/53 (62%), Positives = 42/53 (79%)
 Frame = +1

Query: 58  MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 216
           MD     A VVKV+GRTGS+GQ TQV+V+F  ++ R I+RNVKGPVR+GD+LT
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRFIMRNVKGPVREGDVLT 52


>At3g13180.1 68416.m01649 NOL1/NOP2/sun family protein /
           antitermination NusB domain-containing protein low
           similarity to SP|P36929 SUN protein (FMU protein)
           {Escherichia coli}; contains Pfam profiles PF01189:
           NOL1/NOP2/sun family, PF01029: NusB family
          Length = 523

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
 Frame = -3

Query: 252 SKSPGFTLRLEKGQDVSVAD-----RSLHVPDDLTASLSD 148
           +  PGF+LR   G+D++ AD      SL VP +L+  L +
Sbjct: 251 NNDPGFSLRANTGRDITRADLVERLNSLKVPHELSLHLEE 290


>At1g17360.1 68414.m02116 COP1-interacting protein-related similar
           to COP1-Interacting Protein 7 (CIP7) (GI:3327870)
           [Arabidopsis thaliana]
          Length = 1032

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 116 RDSVLRSKWSSSERLAVRSSGT*RDLSATETS*PFSSRSVKPGD 247
           RD+ LR +WSS E   ++S     D S TE    FS+ S+K  D
Sbjct: 563 RDAKLREEWSSKES-KLKSMQEALDQSRTEMKAKFSAASMKRQD 605


>At5g20910.1 68418.m02483 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 310

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = -3

Query: 225 LEKGQDVSVADRSLHVP-DDLTASLSDELHFDLSTLSL*SGAAEHFHDTSKNVRLIHFEL 49
           ++     S ++ SL +  DDL   L+ +L F+ S  S+ +   +H+  +S ++R    + 
Sbjct: 1   MDASSSPSPSEESLKLELDDLQKQLNKKLRFEASVCSIHNLLRDHYSSSSPSLRK---QF 57

Query: 48  YIELREIYTCTK 13
           YI +  + T  K
Sbjct: 58  YIVVSRVATVLK 69


>At2g41360.1 68415.m05105 F-box family protein similar to SKP1
           interacting partner 6 [Arabidopsis thaliana]
           GI:10716957; contains Pfam profile PF00646: F-box domain
          Length = 373

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -3

Query: 261 GPLSKSPGFTLRLEKGQDVSVADRSLHVPDDLTASLSDELHFDLST 124
           GP+   P F LR+     V V D  +HV  DL    ++E  +DL T
Sbjct: 142 GPIK--PEF-LRIASSSAVGVFDGKIHVIQDLKQDETEEQVYDLET 184


>At4g35500.2 68417.m05045 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 439

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 58  MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIR 177
           +DK   + R++     +G  GQ   + +EF+G++  ++IR
Sbjct: 95  LDKTKCVVRLIDHFKHSGPNGQHLCMVLEFLGDSLLRLIR 134


>At4g35500.1 68417.m05044 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 438

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 58  MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIR 177
           +DK   + R++     +G  GQ   + +EF+G++  ++IR
Sbjct: 94  LDKTKCVVRLIDHFKHSGPNGQHLCMVLEFLGDSLLRLIR 133


>At1g16330.1 68414.m01954 cyclin family protein similar to SP|P25011
           G2/mitotic-specific cyclin S13-6 (B-like cyclin)
           {Glycine max}; contains Pfam profiles PF00134: Cyclin,
           N-terminal domain, PF02984: Cyclin, C-terminal domain
          Length = 396

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -3

Query: 207 VSVADRSLHVPDDLTASLSDELHFDLSTLSL*SGAAEHFHDTSKNVRL-IHFELYI 43
           + VA  +LH+    T+ L++  H+++S +   S     FH  +K   L + +E YI
Sbjct: 323 IYVARCTLHMTPVWTSLLNNHTHYNVSQMKDCSDMILRFHKAAKTGNLRVTYEKYI 378


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,988,669
Number of Sequences: 28952
Number of extensions: 147448
Number of successful extensions: 353
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)