Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K15
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    30   0.22 
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    27   1.6  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    27   2.1  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   2.8  
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    25   6.4  

>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = +2

Query: 20  HSDQNWYEVIPLILLGIRNAWKEDIGSSSAELVYGETLKLPSDFF--LASSVAEVTDYSD 193
           H +    EVIP+I++GIR+                 TL  PSD    L +S  + T  SD
Sbjct: 341 HRNHEGQEVIPIIIVGIRSLRNSGSDEDDQPSADSPTLMHPSDLISSLVNSQNQTTSVSD 400


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 347 YTGPYKVISRSDKTFQIDIAGKIVTVSIDRLK-PAYLLS 460
           Y GP+       + F+  I G+++ +S DRL+ PAY L+
Sbjct: 328 YGGPHAGFFACSEEFKRKIPGRLIGLSKDRLENPAYRLA 366


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 335 LQPPYTGPYKVISRSDKTFQIDIAGKIV 418
           L+P  T  Y +I + D+TF++ I G +V
Sbjct: 196 LKPGITNLYTLIVKPDQTFEVRINGDVV 223


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 125 ETLKLPSDFFLASSVAEVTDYSDFLSRLRRYMCNLKPTTVTRH 253
           E L +P D  +  SVAEV     + + +R   C LK  + + H
Sbjct: 61  ELLDIPKDKIIGHSVAEVLGTDGYNAFMRAVNCLLKDDSHSYH 103


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +2

Query: 11  IMCHSDQNWYEVIPLILLGIRNAWKEDIGSSSAELVYGETLKLP 142
           ++C  +   Y++  ++LL +   WK    +S A ++   T  LP
Sbjct: 130 LICLVETTVYQISVVLLLCLTMGWKSWTSASGAVILSSSTRMLP 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,981,860
Number of Sequences: 5004
Number of extensions: 37906
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)