Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K15
         (502 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)                       37   0.008
SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.043
SB_6196| Best HMM Match : rve (HMM E-Value=3.7e-12)                    34   0.057
SB_8975| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.076
SB_26476| Best HMM Match : TFIIS_C (HMM E-Value=3.6)                   31   0.71 
SB_21275| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.93 
SB_14775| Best HMM Match : rve (HMM E-Value=6.6e-15)                   29   1.6  
SB_7177| Best HMM Match : rve (HMM E-Value=4.8e-18)                    29   2.2  
SB_40458| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_32066| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_10616| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_15353| Best HMM Match : DUF928 (HMM E-Value=9.6)                    28   5.0  
SB_14439| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_10594| Best HMM Match : UPF0153 (HMM E-Value=6.5)                   28   5.0  
SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0)                       27   6.6  
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)          27   6.6  
SB_32670| Best HMM Match : CIMR (HMM E-Value=0)                        27   8.7  
SB_38577| Best HMM Match : rve (HMM E-Value=2.4e-24)                   27   8.7  

>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 2639

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 17/166 (10%)
 Frame = +2

Query: 29   QNWYEVIPLILLGIRNAWKEDIGSSSAELVYGETLKLPSDFFLASSVAEVTDYSDFLSRL 208
            ++W   IP +L   R +  +  G S   L+YG + +LP D  L       T  ++  +R+
Sbjct: 1365 KDWDIFIPSVLFAHRTSISDSTGDSPFYLLYGRSPRLPIDVSLLPRKEVSTSIAEHRARI 1424

Query: 209  RRYMCNLKPTTVTRHGKSNIFVHKDLQKSSQ---------VFLRTD----ALKRALQPPY 349
             + +   +    +   K+   +     ++S+         V++ T      L R LQ  +
Sbjct: 1425 VQGVELSQRIAHSLIQKAQQKMKAQYDRTSKPATFTVGQRVWVYTPKTKKGLSRKLQNKW 1484

Query: 350  TGPYKVISR-SDKTFQIDIAGK---IVTVSIDRLKPAYLLSESPTL 475
             GPY++  R SD  F++         VTV  +R+KP Y  ++ PTL
Sbjct: 1485 WGPYRITQRLSDVHFRLRTTTNRPVSVTVHANRMKPYYDPADRPTL 1530


>SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1958

 Score = 34.7 bits (76), Expect = 0.043
 Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 17/166 (10%)
 Frame = +2

Query: 29   QNWYEVIPLILLGIRNAWKEDIGSSSAELVYGETLKLPSDFFL------ASSVAE----V 178
            ++W   IP +L   R +  +  G S   L+YG +  LP D  L      ++S+AE    +
Sbjct: 1755 KDWDIFIPSVLFAHRTSISDSTGDSPFYLLYGRSPSLPIDVSLLPCKEVSTSIAEHRARI 1814

Query: 179  TDYSDFLSRLRRYMCNLKPTTV-TRHGKSNIFVHKDLQKSSQVFL--RTDALKRALQPPY 349
                +   R+   +       +  ++ +++  V   + +   V+       L R LQ  +
Sbjct: 1815 VQGVELSQRIAHSLIQKAQQKMKAQYDRTSKPVTFTVGQRVWVYTPKAKKGLSRKLQNKW 1874

Query: 350  TGPYKVISR-SDKTFQIDIAGK---IVTVSIDRLKPAYLLSESPTL 475
             GPY +  R SD  F++         VTV  +R+KP Y  ++ PTL
Sbjct: 1875 WGPYCITQRLSDVHFRLRTTTNRPASVTVHANRMKPYYDPADRPTL 1920


>SB_6196| Best HMM Match : rve (HMM E-Value=3.7e-12)
          Length = 444

 Score = 34.3 bits (75), Expect = 0.057
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +2

Query: 23  SDQNWYEVIPLILLGIRNAWKEDIGSSSAELVYGETLKLPSD 148
           + Q W   +PL LL  R+A  E  G + A +++G  L+LP D
Sbjct: 218 NQQTWDRDVPLALLAYRSAVHEATGYTPACMMFGRELRLPID 259


>SB_8975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1002

 Score = 33.9 bits (74), Expect = 0.076
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +2

Query: 23   SDQNWYEVIPLILLGIRNAWKEDIGSSSAELVYGETLKLPSD 148
            + Q W   +PL LL  R+A  E  G + A +++G  L+LP D
Sbjct: 947  NQQTWDRDVPLALLAYRSAVYEATGYTPACMMFGRELRLPID 988


>SB_26476| Best HMM Match : TFIIS_C (HMM E-Value=3.6)
          Length = 256

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +2

Query: 206 LRRYMCNLKPTTVTRHGKSNIFVHKDLQKSSQVFLRTDALKRALQ-PPYTGPYK 364
           LRRY+C   P  + R       +    +KS ++ +R D L+      PY GP +
Sbjct: 94  LRRYICKYVPYMMIRSANLVASLSSSSRKSDRIHIRDDTLEEISGFHPYNGPMR 147


>SB_21275| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = +2

Query: 101 SSAELVYGETLKLPSDFFLASSVAEVTDYSDFLSRLRR-YMCNLKPTTVTRH-GKSNIFV 274
           S  EL+ G+TL   SD   A S    T   + L R+R+  +  LK T   R  G + +  
Sbjct: 223 SFQELIKGKTLSKTSDKRDALSTPTQTINQELLQRIRKGCLSELKSTPCKRSPGGTPVKR 282

Query: 275 HKDLQKSSQVFLRTDALKRALQ 340
            + L +S    L T ALKR  Q
Sbjct: 283 QRRLSESDTSDLITIALKRKFQ 304


>SB_14775| Best HMM Match : rve (HMM E-Value=6.6e-15)
          Length = 167

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 29  QNWYEVIPLILLGIRNAWKEDIGSSSAELVYG 124
           +NW +++P +LL       E  G S  EL+YG
Sbjct: 134 RNWDKMLPYLLLAYHEVPSESTGFSQFELLYG 165


>SB_7177| Best HMM Match : rve (HMM E-Value=4.8e-18)
          Length = 311

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 14/134 (10%)
 Frame = +2

Query: 29  QNWYEVIPLILLGIRNAWKEDIGSSSAELVYGETLKLPSDFFLASSVAEV-TDYSDFL-- 199
           +NW   +    L    A     G + + L +G  L+LP+D    + + EV  D+++F   
Sbjct: 116 KNWDLYLSTTCLAYNTAVHSSTGYTPSYLEFGRELRLPTDLVDTAFMPEVRLDHAEFALQ 175

Query: 200 --SRLRRYMCNLKPTTVTRHGKSNIFV-----HKDLQKSSQVFLRTDALKRA----LQPP 346
             SRL++     + T    H     +       K  +K  QV       +R     L  P
Sbjct: 176 LKSRLQKAYKVARDTLRLFHQSQKSYYDRWVKEKIFKKGDQVLWFDKKTRRGRCMKLNRP 235

Query: 347 YTGPYKVISRSDKT 388
           ++GP+ V+    +T
Sbjct: 236 WSGPWIVVHNEHQT 249


>SB_40458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1383

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 22/68 (32%), Positives = 33/68 (48%)
 Frame = +2

Query: 14   MCHSDQNWYEVIPLILLGIRNAWKEDIGSSSAELVYGETLKLPSDFFLASSVAEVTDYSD 193
            +C  D+ W E +P  +      WK D+ S S +L      K P+   +AS  AE+  +SD
Sbjct: 906  LCKEDKGWDEKVPENVCTAWEPWKTDLHSLS-KLKIPRCYKPPNFGDIAS--AELHHFSD 962

Query: 194  FLSRLRRY 217
              +R  RY
Sbjct: 963  --ARTTRY 968


>SB_32066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = +2

Query: 245 TRHGKSNIFVHKDLQKSSQVFLRTDALKRALQPPYTGPYKVISRSDKTFQIDIAGKIVTV 424
           T H  S + VH D +K+ ++  R    K+ ++ P      ++S  ++ F+  IA +  + 
Sbjct: 12  TNHDNSRVIVHPDDKKTGKIIPRVTPTKK-VEKPRDVSVGLVSNVNQFFKNKIARRKPSG 70

Query: 425 SIDRLKPAYL 454
             D  K A L
Sbjct: 71  KTDSRKRAML 80


>SB_10616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 119 YGETLKLPSDFFLASSVAEVTDYSDFLSRLRRYMCN 226
           Y     + +DF L S +A+V    +F+SR+ RY+ N
Sbjct: 110 YNHEFVINTDFNLVSFMADVLVRFEFVSRVGRYIAN 145


>SB_15353| Best HMM Match : DUF928 (HMM E-Value=9.6)
          Length = 208

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +2

Query: 308 LRTDALK---RALQPPYTGPYKVISRSDKTFQIDIAGKIVTVSIDRLKPAYL 454
           LRT+ L+   + L   Y  P+K +SRS  +  + +  K   ++ D+ KP  L
Sbjct: 143 LRTETLRGECKQLFLSYLKPFKPVSRSTISRWVKVVMKTAGINTDKFKPQVL 194


>SB_14439| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 686

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 188 SDFLSRLRRYMCNLKPTTVTRHGKSNIFV 274
           +DFL+ L ++M NL  T     GK+ ++V
Sbjct: 191 NDFLAHLHKFMANLTDTRYKMQGKTVLYV 219


>SB_10594| Best HMM Match : UPF0153 (HMM E-Value=6.5)
          Length = 116

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 194 FLSRLRRYMCNLKPTTVTRHGKSNIFVHKDLQKSSQVFLRTD-ALKRALQPPY 349
           F     R +  ++PT + RH  S   +H D    +   LR + +LK AL P Y
Sbjct: 17  FYCCFERTLFTMEPTGLIRHVASGYCLHSDPALCTLHLLRNNGSLKAALSPVY 69


>SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 2353

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +2

Query: 2    HEAIMCHSDQNWYEVIPLILLGIRNAWKEDIGSSSAELVYGETLKLPSDFFLASSV-AEV 178
            ++ IM   +  W + +  ++        +  G S   L+YG + +LP D  L +S+    
Sbjct: 1558 NDYIMREPETKWKDSLNKVVHAYNCTRNDSTGFSPFYLLYGRSPRLPIDLMLGTSLQGTP 1617

Query: 179  TDYSDFLSRLRRYM 220
              Y  ++++ R  M
Sbjct: 1618 QQYPKYVTKWRETM 1631


>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
          Length = 1494

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 23/83 (27%), Positives = 39/83 (46%)
 Frame = +2

Query: 98   SSSAELVYGETLKLPSDFFLASSVAEVTDYSDFLSRLRRYMCNLKPTTVTRHGKSNIFVH 277
            SSS+   +  +  LPSDF  +SS+      SDFLS    ++ +    +      S++   
Sbjct: 1265 SSSSPSDFLSSSSLPSDFLTSSSL-----LSDFLSLPSDFLTSSSSLSDFLTSSSSLSDF 1319

Query: 278  KDLQKSSQVFLRTDALKRALQPP 346
                 S +VFL + + + +L PP
Sbjct: 1320 LTSSSSLRVFLTSSSSRGSLFPP 1342


>SB_32670| Best HMM Match : CIMR (HMM E-Value=0)
          Length = 1441

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 335  LQPPYTGPYKVISRSDKTFQIDIAGKIVTVSID 433
            L  P   PY + +   +TF+++I GKI + + D
Sbjct: 933  LSKPTLSPYTLTTLDGRTFKLNICGKIRSCNAD 965


>SB_38577| Best HMM Match : rve (HMM E-Value=2.4e-24)
          Length = 205

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +2

Query: 32  NWYEVIPLILLGIRNAWKEDIGSSSAELVYGETLKLPSDFFLASSV-AEVTDYSDFLSRL 208
           NW + +  ++        +  G S   L+YG + +LP D  L +S+      Y  ++++ 
Sbjct: 111 NWKDSLNKVVHAYNCTRNDSTGFSPFYLLYGRSPRLPIDLMLGTSLQGTPQQYPKYVTKW 170

Query: 209 RRYM 220
           R  M
Sbjct: 171 RETM 174


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,622,537
Number of Sequences: 59808
Number of extensions: 268153
Number of successful extensions: 560
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)