Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K15
         (502 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros...    30   2.0  
M17214-2|AAA28508.1|  858|Drosophila melanogaster protein ( D.me...    30   2.0  
AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependen...    30   2.0  
AY113371-1|AAM29376.1| 1237|Drosophila melanogaster LP01827p pro...    28   8.2  
AE014298-2399|AAF48606.2| 1342|Drosophila melanogaster CG4301-PA...    28   8.2  

>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
            Drosophila retrotransposon412 genome. ).
          Length = 1237

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
 Frame = +2

Query: 110  ELVYGETLKLPSDFFLASSVAEVTDYSDFL--SRLRRYMCNLKPTTVTR----HGKSNIF 271
            ELV+G T  LP  F    S+  + +  D+   S+ R  +   +   +        K N  
Sbjct: 1113 ELVFGRTSNLPKHFNKLHSIEPIYNIDDYAKESKYRLEVAYARARKLLEAHKEKNKENYD 1172

Query: 272  VH-KD--LQKSSQVFLRTDALKRALQPPYTGPYKVISRSD 382
            +  KD  L+   +V LR + +   L   YTGPYK+ S  D
Sbjct: 1173 LKVKDIELEVGDKVLLRNE-VGHKLDFKYTGPYKIESIGD 1211


>M17214-2|AAA28508.1|  858|Drosophila melanogaster protein (
           D.melanogaster Fw repetitiveelement putative reverse
           transcriptase, complete cds,and putative binding
           protein, 3' end. ).
          Length = 858

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = +2

Query: 80  WKEDIGSSSAELVYGETLKLPSDFFLASSVAEVT-DYSDFLSRLRRYMCNLKPTTVTRHG 256
           W  D+      + +  T  +      A  + +++ D+S  L  LRRY  N+KP T     
Sbjct: 179 WPSDLNKLPDLIDFAVTKNISRSLVKAECLPDLSSDHSPVLIHLRRYAENVKPPTRLTSS 238

Query: 257 KSNIFVHK 280
           K+N   +K
Sbjct: 239 KTNWLRYK 246


>AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependent DNA
            polymerase protein.
          Length = 1000

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
 Frame = +2

Query: 110  ELVYGETLKLPSDFFLASSVAEVTDYSDFL--SRLRRYMCNLKPTTVTR----HGKSNIF 271
            ELV+G T  LP  F    S+  + +  D+   S+ R  +   +   +        K N  
Sbjct: 876  ELVFGRTSNLPKHFNKLHSIEPIYNIDDYAKESKYRLEVAYARARKLLEAHKEKNKENYD 935

Query: 272  VH-KD--LQKSSQVFLRTDALKRALQPPYTGPYKVISRSD 382
            +  KD  L+   +V LR + +   L   YTGPYK+ S  D
Sbjct: 936  LKIKDIELEVGDKVLLRNE-VGHKLDFKYTGPYKIESIGD 974


>AY113371-1|AAM29376.1| 1237|Drosophila melanogaster LP01827p
           protein.
          Length = 1237

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/64 (29%), Positives = 27/64 (42%)
 Frame = +2

Query: 128 TLKLPSDFFLASSVAEVTDYSDFLSRLRRYMCNLKPTTVTRHGKSNIFVHKDLQKSSQVF 307
           T  LP  F +A + A+   Y D L      + N  P TV R GK  I   +D+     + 
Sbjct: 16  TSLLPLVFVIAVTAAK-QGYEDILRYRTDNVVNSSPVTVIRDGKEAIIKSQDVIPGELIV 74

Query: 308 LRTD 319
           +  D
Sbjct: 75  VERD 78


>AE014298-2399|AAF48606.2| 1342|Drosophila melanogaster CG4301-PA
           protein.
          Length = 1342

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/64 (29%), Positives = 27/64 (42%)
 Frame = +2

Query: 128 TLKLPSDFFLASSVAEVTDYSDFLSRLRRYMCNLKPTTVTRHGKSNIFVHKDLQKSSQVF 307
           T  LP  F +A + A+   Y D L      + N  P TV R GK  I   +D+     + 
Sbjct: 121 TSLLPLVFVIAVTAAK-QGYEDILRYRTDNVVNSSPVTVIRDGKEAIIKSQDVIPGELIV 179

Query: 308 LRTD 319
           +  D
Sbjct: 180 VERD 183


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,650,415
Number of Sequences: 53049
Number of extensions: 372534
Number of successful extensions: 728
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1784022528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)