Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K15
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation transp...    33   0.15 
AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical...    33   0.15 
U58760-5|AAK31464.1| 1076|Caenorhabditis elegans Hypothetical pr...    31   0.36 
Z46996-1|CAA87099.1|  472|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AL032657-9|CAA21736.1|  829|Caenorhabditis elegans Hypothetical ...    29   1.9  

>AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation
            transporting ATPase protein.
          Length = 1121

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
 Frame = +2

Query: 35   WYEVIPL--ILLGIRNAWKEDIGSSSAELVYGETLKLPSDFFLASSVAEVTDYSDFLSRL 208
            WY  IP+  IL    + WK  IG+ +     G T       F+    A     +  +S++
Sbjct: 972  WYHNIPISDILFTAEHHWK--IGAKNFTTSQGLTFGEQQQLFIKGQAAAAWQITLVMSQV 1029

Query: 209  -RRYMCNLKPTTVTRHGKSNI 268
               Y C  +  +V RHG +NI
Sbjct: 1030 FHLYNCTTRRVSVFRHGLTNI 1050


>AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical
            protein Y105E8A.12a protein.
          Length = 1121

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
 Frame = +2

Query: 35   WYEVIPL--ILLGIRNAWKEDIGSSSAELVYGETLKLPSDFFLASSVAEVTDYSDFLSRL 208
            WY  IP+  IL    + WK  IG+ +     G T       F+    A     +  +S++
Sbjct: 972  WYHNIPISDILFTAEHHWK--IGAKNFTTSQGLTFGEQQQLFIKGQAAAAWQITLVMSQV 1029

Query: 209  -RRYMCNLKPTTVTRHGKSNI 268
               Y C  +  +V RHG +NI
Sbjct: 1030 FHLYNCTTRRVSVFRHGLTNI 1050


>U58760-5|AAK31464.1| 1076|Caenorhabditis elegans Hypothetical
           protein C27A2.1 protein.
          Length = 1076

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
 Frame = +2

Query: 38  YEVIPLILLGIRNAWKEDIGSSSAELVYGETL--KLPSDFFLASSVAEVTDYSDFLSRLR 211
           Y+   L++ G +++W+ +     AE +Y E +  +LPS+         V++  D  + L+
Sbjct: 483 YKEDELLINGKQHSWRINTSVVPAEKIYSEDIDAQLPSELSRLGFKYLVSNCFDAPAPLK 542

Query: 212 RYMCNLKPTTVTRHGKSNIFVHKDLQKSSQVFLRT 316
           +++CN+        G S+  V K + + SQ   +T
Sbjct: 543 QFLCNVSGLNRIPFGGSD--VEKKIAEVSQAIEQT 575


>Z46996-1|CAA87099.1|  472|Caenorhabditis elegans Hypothetical
           protein C34C12.1 protein.
          Length = 472

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +2

Query: 254 GKSNIFVHKDLQKSSQVFLRTDALKRALQPPYTGPYK-VISRSDKTFQIDIA 406
           GK++     D++K   V +  D LK   +PP+   +K +ISRS+K  +I+IA
Sbjct: 112 GKNDELRMADVEKVEDVKMIRD-LKAGKRPPFKTEFKNLISRSEKFRRIEIA 162


>AL032657-9|CAA21736.1|  829|Caenorhabditis elegans Hypothetical
           protein Y47H9C.9 protein.
          Length = 829

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +2

Query: 254 GKSNIFVHKDLQKSSQVFLRTDALKRALQPPYTGPYK-VISRSDKTFQIDIA 406
           GK++     D++K   V +  D LK   +PP+   +K +ISRS+K  +I+IA
Sbjct: 107 GKNDELRMADVEKVEDVKMIRD-LKAGKRPPFKTEFKNLISRSEKFRRIEIA 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,830,254
Number of Sequences: 27780
Number of extensions: 200676
Number of successful extensions: 434
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)