Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K15
         (502 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57560.1 68418.m07191 xyloglucan:xyloglucosyl transferase / x...    31   0.44 
At2g29880.1 68415.m03628 hypothetical protein                          31   0.58 
At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica...    27   5.4  
At4g19170.1 68417.m02829 9-cis-epoxycarotenoid dioxygenase, puta...    27   5.4  
At5g25500.1 68418.m03034 expressed protein ; expression supporte...    27   7.1  
At5g48070.1 68418.m05939 xyloglucan:xyloglucosyl transferase, pu...    27   9.4  
At3g24220.1 68416.m03039 9-cis-epoxycarotenoid dioxygenase, puta...    27   9.4  
At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein ...    27   9.4  
At1g29170.1 68414.m03569 expressed protein ; expression supporte...    27   9.4  

>At5g57560.1 68418.m07191 xyloglucan:xyloglucosyl transferase /
           xyloglucan endotransglycosylase / endo-xyloglucan
           transferase (TCH4) identical to xyloglucan
           endotransglycosylase TCH4 protein GI:886116
          Length = 284

 Score = 31.1 bits (67), Expect = 0.44
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 52  INTSWDKKRLERRYRKFLSRACIWRNFKA 138
           + T W K      YR F   AC+W N K+
Sbjct: 198 VKTDWSKAPFTASYRGFQQEACVWSNGKS 226


>At2g29880.1 68415.m03628 hypothetical protein
          Length = 308

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 18/66 (27%), Positives = 34/66 (51%)
 Frame = +2

Query: 14  MCHSDQNWYEVIPLILLGIRNAWKEDIGSSSAELVYGETLKLPSDFFLASSVAEVTDYSD 193
           M  SDQ  YE+  +++  I+  W++  G+ S   V  + L L +  F  +       Y++
Sbjct: 20  MSWSDQECYELTAILVDAIKRGWRDKNGTISKTTVERKILPLLNKKFKCNKT-----YTN 74

Query: 194 FLSRLR 211
           +LSR++
Sbjct: 75  YLSRMK 80


>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
            domain-containing protein / RING finger domain-containing
            protein similar to SP|P36607 DNA repair protein rad8
            {Schizosaccharomyces pombe}; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain, PF00097: Zinc finger,
            C3HC4 type (RING finger)
          Length = 1277

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 152  FLASSVAEVTDYSDFLSRLRRYMCNLKPTTVTRHGKSNIFVHKDLQ 289
            FL  S A+   Y+D  S  RR++ N  P +V+++  S  ++ + +Q
Sbjct: 986  FLVMSRADSQQYADLDSLARRFLDN-NPDSVSQNAPSRAYIEEVIQ 1030


>At4g19170.1 68417.m02829 9-cis-epoxycarotenoid dioxygenase,
           putative / neoxanthin cleavage enzyme, putative /
           carotenoid cleavage dioxygenase, putative similar to
           9-cis-epoxycarotenoid dioxygenase [Phaseolus
           vulgaris][GI:6715257]; neoxanthin cleavage enzyme,
           Lycopersicon esculentum, PATX:E325797
          Length = 595

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 23  SDQNWYEVIPLILLGIRNAWKEDIGSS 103
           S+  W+EV    ++   NAW ED G+S
Sbjct: 390 SEMKWFEVPGFNIIHAINAWDEDDGNS 416


>At5g25500.1 68418.m03034 expressed protein ; expression supported
           by MPSS
          Length = 420

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = +2

Query: 137 LPSDFFLASSVAEVTDYSDFLSRLRRYMCNLKPTTVTRHGKSNIFVHKDLQKSSQVFL 310
           +P+ +  A++ A+  D  D ++ LRRY+ + +  TV  H    + + + L +   VFL
Sbjct: 228 VPARYAKANASAKWEDVLDMVNDLRRYLEHDEEITVLYHLDKLVSMKEGLLQIKDVFL 285


>At5g48070.1 68418.m05939 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           xyloglucan endotransglycosylase TCH4 GI:886116 from
           [Arabidopsis thaliana]
          Length = 282

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 58  TSWDKKRLERRYRKFLSRACIWRNFKA 138
           T W K      YR +   AC+W N K+
Sbjct: 207 TDWSKAPFTAFYRNYNVDACVWSNGKS 233


>At3g24220.1 68416.m03039 9-cis-epoxycarotenoid dioxygenase,
           putative / neoxanthin cleavage enzyme, putative /
           carotenoid cleavage dioxygenase, putative similar to
           GB:CAB10168 from [Lycopersicon esculentum] (J. Exp. Bot.
           47, 2111-2112 (1997)); similar to 9-cis-epoxycarotenoid
           dioxygenase [Phaseolus vulgaris][GI:6715257]
          Length = 577

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
 Frame = +2

Query: 23  SDQNWYEVIPLILLGIRNAWKEDIGSSSAEL-VYGETLKLPSDFFLASSVAEVTDYSDFL 199
           SD NW +V       + NAW+E        + V G  +  P   F  S      + S+  
Sbjct: 376 SDINWVDVPDCFCFHLWNAWEERTEEGDPVIVVIGSCMSPPDTIFSESGEPTRVELSEIR 435

Query: 200 SRLRRYMCNLK 232
             +R    N K
Sbjct: 436 LNMRTKESNRK 446


>At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 536

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 20/76 (26%), Positives = 38/76 (50%)
 Frame = +2

Query: 152 FLASSVAEVTDYSDFLSRLRRYMCNLKPTTVTRHGKSNIFVHKDLQKSSQVFLRTDALKR 331
           F+ ++   V  Y +  SR  RY+ N KP    R+G    F+ +D++ ++ +  R     R
Sbjct: 379 FICNARVLVKPYRE-KSRSSRYLDNYKPLHGMRYGSK--FIERDIEMNT-LPPRVSESSR 434

Query: 332 ALQPPYTGPYKVISRS 379
             +P  + P + +S+S
Sbjct: 435 MRKPFLSEPEQSVSKS 450


>At1g29170.1 68414.m03569 expressed protein ; expression supported by
            MPSS
          Length = 1016

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 161  SSVAEVTDYSDFLSRLRRYMCNLKPTTVTRHGKSNIFVHKDLQ-KSSQVFLRTDALKRAL 337
            S+ A+ T+  DFL ++R    NL+P  +T    +       +  K S +  + +++++A+
Sbjct: 943  SANAKETETGDFLQQIRTQQFNLRPVVMTTTSSATATTDPIINTKISAILEKANSIRQAV 1002


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,167,104
Number of Sequences: 28952
Number of extensions: 187345
Number of successful extensions: 447
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)