Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_K13
(531 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021... 91 4e-19
06_01_0671 - 4899611-4899829,4900870-4901448 64 5e-11
04_03_0889 + 20568984-20569037,20569271-20569345,20569981-205700... 48 2e-10
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 62 2e-10
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080 59 3e-09
01_01_0288 - 2373764-2373923,2374016-2374398,2375426-2375710 29 1.8
10_08_0136 - 15122420-15122469,15123845-15124334,15124822-151249... 28 4.1
06_03_0630 + 22926652-22928133 28 4.1
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 28 4.1
06_01_0449 - 3176135-3176329,3176531-3177289,3177420-3177905,317... 28 5.4
01_06_1548 + 38157796-38157955,38158771-38159252 28 5.4
03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775 27 7.1
02_03_0183 + 16106205-16106474 27 7.1
02_01_0449 - 3229260-3229365,3230264-3230396,3230536-3230625,323... 27 7.1
09_02_0622 - 11310941-11311472,11312776-11312813,11312875-113129... 27 9.4
08_01_0910 + 8968896-8968932,8969111-8969181,8970417-8970740,897... 27 9.4
08_01_0295 - 2379181-2379336,2379660-2380324,2381346-2382882 27 9.4
03_04_0078 - 17093767-17093828,17094270-17094699,17095837-170959... 27 9.4
01_01_1148 - 9113728-9113835,9113952-9114035,9114831-9114992,911... 27 9.4
>02_04_0116 +
19901546-19901737,19901825-19901899,19902034-19902115,
19902219-19902298,19903279-19903482,19903625-19903750,
19903872-19903985,19904802-19904918
Length = 329
Score = 91.5 bits (217), Expect = 4e-19
Identities = 40/77 (51%), Positives = 56/77 (72%)
Frame = +3
Query: 297 FTHLAWINTSRKQGGLGPMNIPIISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQ 476
F+HLAW+ T RK GGLG + P+ISD + IS+ +GVL + GI RGLFIID + ++
Sbjct: 212 FSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSFGVLIPDQGIALRGLFIIDKEGVIQH 271
Query: 477 ITVNDLPVGRSVEETLR 527
T+N+L +GRSV+ET+R
Sbjct: 272 STINNLAIGRSVDETMR 288
Score = 89.8 bits (213), Expect = 1e-18
Identities = 42/69 (60%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Frame = +3
Query: 90 APQFKTTAVVNGEFKDVALSDFKGK-YVVLFFYPLDFTFVCPTEIIAFSERADDFRKIGC 266
AP F AV + EF +V LSD+ GK YV+LFFYPLDFTFVCPTEI AFS+R D+F K+
Sbjct: 74 APDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYDEFEKLNT 133
Query: 267 EVIAASTDS 293
E++ S DS
Sbjct: 134 EILGVSIDS 142
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 64.5 bits (150), Expect = 5e-11
Identities = 41/132 (31%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
Frame = +3
Query: 138 VALSDFKGKYVVLFFYPLDFTFVCPTEIIAFSERADDFRKIGCEVIAASTDSHFTHLAWI 317
V+LS FKG+ VV++FYP D T C + AF + + F+K G EVI S D +H +
Sbjct: 137 VSLSKFKGRPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDAASHKEF- 195
Query: 318 NTSRKQGGLGPMNIPIISDKSHRISRDYGVLDEETG-IPFRGLFIIDDKQNLRQITVNDL 494
+K+ L P ++SD+ +++ +++GV + G +P R +++D ++ I N
Sbjct: 196 ---KKKYKL-PFT--LLSDEGNKVRKEWGVPADLFGTLPGRQTYVLDKNGVVQYIYNNQF 249
Query: 495 PVGRSVEETLRL 530
+ + ETL++
Sbjct: 250 QPEKHIGETLKI 261
>04_03_0889 +
20568984-20569037,20569271-20569345,20569981-20570088,
20572066-20572179,20572393-20572509
Length = 155
Score = 47.6 bits (108), Expect(2) = 2e-10
Identities = 22/42 (52%), Positives = 30/42 (71%)
Frame = +3
Query: 402 GVLDEETGIPFRGLFIIDDKQNLRQITVNDLPVGRSVEETLR 527
GV + GI RGLFIID + ++ T+N+L +GRSV+ETLR
Sbjct: 73 GVSIDSVGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLR 114
Score = 35.1 bits (77), Expect(2) = 2e-10
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +3
Query: 201 FVCPTEIIAFSERADDFRKIGCEVIAASTDS 293
FV EI AFS+R ++F KI EV+ S DS
Sbjct: 48 FVSSAEITAFSDRYEEFEKINTEVLGVSIDS 78
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 62.5 bits (145), Expect = 2e-10
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Frame = +3
Query: 138 VALSDFKGK-YVVLFFYPLDFTFVCPTEIIAFSERADDFRKIGCEVIAASTDSHFTHLAW 314
+ + DF G YV+LF +P DFT VC TE+ A + A +F K G +++ S D +H W
Sbjct: 57 IRIHDFVGDTYVILFSHPGDFTPVCTTELAAMAGYAKEFDKRGVKLLGISCDDVQSHKDW 116
Query: 315 INTSRKQGGLGPMNIPIISDKSHRISRDYGVLD----EETG--IPFRGLFIIDDKQNLRQ 476
I + PI++D S + ++D + G +P R L I+ + ++
Sbjct: 117 IKDIEAYKPGNRVTYPIMADPSREAIKQLNMVDPDEKDSNGGHLPSRALHIVGPDKKVKL 176
Query: 477 ITVNDLPVGRSVEETLR 527
+ VGR+++E +R
Sbjct: 177 SFLYPACVGRNMDEVVR 193
>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
Length = 220
Score = 58.8 bits (136), Expect = 3e-09
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 7/137 (5%)
Frame = +3
Query: 138 VALSDFKGK-YVVLFFYPLDFTFVCPTEIIAFSERADDFRKIGCEVIAASTDSHFTHLAW 314
+ L DF G YV++F +P DFT VC TE+ + A +F K G +++ S D +H W
Sbjct: 22 IRLHDFVGDAYVIIFSHPADFTPVCTTELSEMAGYAGEFDKRGVKLLGFSCDDVESHKDW 81
Query: 315 INTSRKQGGLGPMNIPIISDKSHRISRDYGVLD---EETG---IPFRGLFIIDDKQNLRQ 476
I + PI++D R ++D ++T +P R L I+ + ++
Sbjct: 82 IKDIEAYKPGRRVGFPIVADPDREAIRQLNMIDADEKDTAGGELPNRALHIVGPDKKVKL 141
Query: 477 ITVNDLPVGRSVEETLR 527
+ GR++ E LR
Sbjct: 142 SFLFPACTGRNMAEVLR 158
>01_01_0288 - 2373764-2373923,2374016-2374398,2375426-2375710
Length = 275
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 324 SRKQGGLGPMNIPIISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNL 470
++K+ G G N+P D R ++DY +DE+ +P F I D++ +
Sbjct: 64 AKKKKGSGAGNLPGAIDAEIREAQDYLAIDEQEPVPENFPFEILDEEGM 112
>10_08_0136 -
15122420-15122469,15123845-15124334,15124822-15124935,
15125022-15125303,15125422-15125591,15125670-15125757,
15126128-15126173,15126254-15126336,15126595-15126694,
15127002-15127081,15127200-15127283,15127373-15127531,
15128617-15128772,15129634-15130197
Length = 821
Score = 28.3 bits (60), Expect = 4.1
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Frame = -2
Query: 359 YVHGTETALFTGGVDPSQVGEVR--VRGGGDHLAPDLTEVISSLRESDYLCRAYE---RE 195
Y+ +T L P+ G ++ V+ +L L VIS++R + C A+E +
Sbjct: 443 YILPNKTLLEIAKQMPATTGRLKRIVKSKNSYLERHLGHVISTIRSAIANCDAFESIAEQ 502
Query: 194 IK--RIEE*HDVFPLKIREGDVFELSVDDG 111
+K R+EE V +K +GD + DDG
Sbjct: 503 LKKGRLEE-LAVANMKSNDGDTEMVPADDG 531
>06_03_0630 + 22926652-22928133
Length = 493
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = -2
Query: 386 AVRLVAYYRYVHGTETALFTGGVDPSQVGEVRVRGGGDHLAPDLTEVIS--SLRESDYLC 213
A YY Y HG AL + DP++ VR+ G + +L +S S YL
Sbjct: 152 AAAFAVYYHYFHGHGEALASCANDPARGAVVRLPGMPFLRSDELPSAVSIVSPEHKHYLL 211
Query: 212 RAYEREI 192
A R++
Sbjct: 212 LAMLRDL 218
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2
Query: 290 VRGGGDHLAPDLTEVISSLR 231
V GGGDH PDL + IS L+
Sbjct: 251 VAGGGDHGDPDLEQAISDLQ 270
>06_01_0449 -
3176135-3176329,3176531-3177289,3177420-3177905,
3178302-3178421,3178637-3178703,3178784-3179007,
3179149-3179234,3179936-3180509
Length = 836
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 296 VRVRGGGDHLAPDLTEVISSLRESDYLCRAYEREI 192
++ GGD A DL E++ L +D LC ++ +
Sbjct: 300 IKRANGGDSRAEDLREILGDLHLNDDLCNKLQKSM 334
>01_06_1548 + 38157796-38157955,38158771-38159252
Length = 213
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 340 PPCLREVLIQAKWVKCESVEAA 275
PP R +QAKW+ C V+A+
Sbjct: 137 PPWRRPSYVQAKWLPCRGVQAS 158
>03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775
Length = 1441
Score = 27.5 bits (58), Expect = 7.1
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = -3
Query: 286 VEAAITSHPILRKSSARSEKAIISVGHTNVKSRG*KNSTTYFPLKSERATS-LNSPLTTA 110
V +IT+ P+L + A + +G + + + T + L A S SPL +
Sbjct: 3 VALSITAFPVLARILAELKLLTTDIGRMAMSAAAVNDITAWVLLALAIALSGSGSPLVSI 62
Query: 109 VVLNCGAGLVSCRGILLKFMIV 44
VL CG V + ++ ++V
Sbjct: 63 YVLLCGVAFVGFATVAVRPVLV 84
>02_03_0183 + 16106205-16106474
Length = 89
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 360 PIISDKSHRISRDYGVLDEETGIP 431
P+ S HR SR +G L E +G P
Sbjct: 59 PLASSHEHRFSRLHGCLPESSGFP 82
>02_01_0449 -
3229260-3229365,3230264-3230396,3230536-3230625,
3231097-3231309,3232317-3232407,3232519-3232707,
3232810-3232920,3233018-3233110
Length = 341
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 114 VVNGEFKDVALSDFKGKYVVLFFYPLDFTFVCPTEIIAFSERADDFR-KIGCEVI 275
++N + K V DF GK+ +L+F +CP E+ + D + K EV+
Sbjct: 187 LLNHDGKPVTQKDFFGKWTLLYFGFTHCPDICPDELQKMALAIDKIKEKAKMEVV 241
>09_02_0622 -
11310941-11311472,11312776-11312813,11312875-11312926,
11313891-11314270
Length = 333
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -3
Query: 346 PR-PPCLREVLIQAKWVKCESVEAAITSHPILRKSSARSEK 227
PR PP LR + WVK + + HP+ SSA+S K
Sbjct: 85 PRAPPLLRGEFLD--WVKAAARQRGKRCHPVPGSSSAKSSK 123
>08_01_0910 +
8968896-8968932,8969111-8969181,8970417-8970740,
8972878-8972934,8974578-8974641,8974749-8974810
Length = 204
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 149 REGDVFELSVDDGCRLELWSW 87
R+G+ + DDGC L LW W
Sbjct: 103 RKGNTDFVMDDDGCGLPLWPW 123
>08_01_0295 - 2379181-2379336,2379660-2380324,2381346-2382882
Length = 785
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -2
Query: 281 GGDH--LAPDLTEVISSLRESDYLCRAYEREIKRIEE*HDVFPLKIREGDVFE 129
GGDH LA ++ +L D + YE+ +KRIE D + + G VF+
Sbjct: 346 GGDHCFLAGGNARLVHAL--CDGVPVLYEKTVKRIEHGEDGVSITVEGGQVFK 396
>03_04_0078 -
17093767-17093828,17094270-17094699,17095837-17095972,
17096081-17096265
Length = 270
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 317 DPSQVGEVRVRGGGDHLAPDLTEVISSLRESDYLCRAY 204
+P + E+R+ D +A DL E IS + E R Y
Sbjct: 10 EPKKNNEIRMFESSDEMATDLAEYISQVSEISIKERGY 47
>01_01_1148 -
9113728-9113835,9113952-9114035,9114831-9114992,
9115120-9115224,9115584-9116216,9117412-9117496,
9118426-9118520,9119083-9119241,9119968-9119997,
9120100-9120306
Length = 555
Score = 27.1 bits (57), Expect = 9.4
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +3
Query: 129 FKDVALSD-FKGKYVVLFFYPLDFTFVC-PTEIIAFSERADDFRKIGCE-VIAASTDSHF 299
F L D F GK VV+F P +T VC + ++ D + G + VI S + +
Sbjct: 59 FSTTPLKDIFHGKKVVIFGLPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDPY 118
Query: 300 THLAW 314
W
Sbjct: 119 ALNGW 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,019,624
Number of Sequences: 37544
Number of extensions: 245420
Number of successful extensions: 830
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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