Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K13
         (531 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)                   230   6e-61
SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)             128   4e-30
SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)             105   2e-23
SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)                32   0.25 
SB_16796| Best HMM Match : Multi_Drug_Res (HMM E-Value=0.96)           29   2.4  
SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)            28   4.1  
SB_1753| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.1  
SB_7856| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6e-11)           28   5.4  
SB_10820| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0)             27   7.2  
SB_58802| Best HMM Match : Gag_spuma (HMM E-Value=2.7)                 27   9.5  
SB_16479| Best HMM Match : Cyclin_N (HMM E-Value=5.9e-23)              27   9.5  

>SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)
          Length = 265

 Score =  230 bits (562), Expect = 6e-61
 Identities = 110/170 (64%), Positives = 135/170 (79%), Gaps = 4/170 (2%)
 Frame = +3

Query: 33  HFEQTIINFNRMPLQLT---KPAPQFKTTAV-VNGEFKDVALSDFKGKYVVLFFYPLDFT 200
           H  + +++F+R  +  T   KPAP F  TAV  +GEF D+ LSD+KGKYVVLFFYPLDFT
Sbjct: 35  HLAKRMMSFSRADMSKTAIQKPAPAFSGTAVNKHGEFIDLKLSDYKGKYVVLFFYPLDFT 94

Query: 201 FVCPTEIIAFSERADDFRKIGCEVIAASTDSHFTHLAWINTSRKQGGLGPMNIPIISDKS 380
           FVCPTEIIAFS+R D+F+ I CEVIA S DS ++HLAW N  RK+GG+G +NIPI+SD +
Sbjct: 95  FVCPTEIIAFSDRVDEFKAINCEVIACSVDSEYSHLAWTNVPRKKGGIGNINIPILSDLT 154

Query: 381 HRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITVNDLPVGRSVEETLRL 530
            +IS+DYGVL E+ G+  RGLFIIDDK  LRQIT+NDLPVGRSV+ETLRL
Sbjct: 155 KQISKDYGVLLEDQGVALRGLFIIDDKGILRQITINDLPVGRSVDETLRL 204


>SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score =  128 bits (308), Expect = 4e-30
 Identities = 56/80 (70%), Positives = 68/80 (85%)
 Frame = +3

Query: 75  QLTKPAPQFKTTAVVNGEFKDVALSDFKGKYVVLFFYPLDFTFVCPTEIIAFSERADDFR 254
           Q++KPAP ++ TAVVNGEFK++ LSDF+GKY+V FFYPLDFTFVCPTEIIAFS+R ++FR
Sbjct: 55  QISKPAPFWEGTAVVNGEFKELKLSDFEGKYLVFFFYPLDFTFVCPTEIIAFSDRIEEFR 114

Query: 255 KIGCEVIAASTDSHFTHLAW 314
            I  EV+  S DS FTHLAW
Sbjct: 115 AINTEVVGCSVDSVFTHLAW 134



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 27/31 (87%), Positives = 29/31 (93%)
 Frame = +3

Query: 438 GLFIIDDKQNLRQITVNDLPVGRSVEETLRL 530
           GLFIIDDK  LRQIT+NDLPVGRSV+ETLRL
Sbjct: 135 GLFIIDDKGVLRQITMNDLPVGRSVDETLRL 165


>SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)
          Length = 704

 Score =  105 bits (252), Expect = 2e-23
 Identities = 49/71 (69%), Positives = 60/71 (84%)
 Frame = +3

Query: 318 NTSRKQGGLGPMNIPIISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITVNDLP 497
           N  RK+GG+G +NIPI+SD + +IS+DYGVL E+ G+  RGLFIIDDK  LRQIT+NDLP
Sbjct: 3   NVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVALRGLFIIDDKGILRQITINDLP 62

Query: 498 VGRSVEETLRL 530
           VGRSV+ETLRL
Sbjct: 63  VGRSVDETLRL 73


>SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)
          Length = 160

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
 Frame = +3

Query: 282 STDSHFTHLAWINTSRKQG-----GLGPMNIPIISDKSHRISRDYGVLD----EETGIPF 434
           S D   +H  W+    K            N PII+D+   ++   G++D    +  G+P 
Sbjct: 5   SCDDAESHRGWVKDITKYNLEQNKSSAKFNYPIIADERRELAVKLGMVDPDEKDSKGLPL 64

Query: 435 --RGLFIIDDKQNLRQITVNDLPVGRSVEETLRL 530
             R +FII   + L+   +     GR+ +E LR+
Sbjct: 65  TCRAVFIIGPDKKLKLSILYPATTGRNFDEILRV 98


>SB_16796| Best HMM Match : Multi_Drug_Res (HMM E-Value=0.96)
          Length = 725

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +3

Query: 270 VIAASTDSHFTHLAWINTSRKQGGLGPMNIPIISDKSHRISRDYGVLDEETGIPF 434
           VI   TDS ++    I+   + GGLG     +IS +     RD G+   ETG+ F
Sbjct: 65  VILGPTDSLYSECTLIDKGWRTGGLGEGLNGMISTRKRARKRDLGM---ETGLEF 116


>SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)
          Length = 627

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
 Frame = -2

Query: 527 PQGLLD*PSDRQI-VDGDLSEVLFVVDDEESAEGDAGLLVEDAVIARDAVRLVAYYRYVH 351
           P+GL D      + V GD+     V +   S  GD   +VED  I  D  R + +    H
Sbjct: 315 PEGLTDKTKVPFLSVGGDIGIRKTVHEGSSSLSGD--YIVEDITIGEDTFRRLVFLINPH 372

Query: 350 G--TETALFTGGVDPSQVGEV 294
           G  +E  LFT      + G +
Sbjct: 373 GIQSEAKLFTAKDGKKKAGHI 393


>SB_1753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 125 SVDDGCRLELWSWLSQLQR 69
           ++D  CRL LW W+ +LQR
Sbjct: 147 NLDCNCRLTLWFWIWRLQR 165


>SB_7856| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6e-11)
          Length = 334

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +3

Query: 372 DKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI--TVND 491
           D    ++  Y V+D+ET I   GL  I +K+N +++  T ND
Sbjct: 275 DTIREVNCRYNVVDKETRIKVTGLLTIKEKKNGKELYRTRND 316


>SB_10820| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0)
          Length = 922

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 150 DFKGKYVVLFFYPLDFTFVCPTEIIAFSERAD 245
           DF+GK+++L+F       +CP E+   +E  D
Sbjct: 772 DFRGKWLLLYFGFTHCPDICPDELEKMAEAID 803


>SB_58802| Best HMM Match : Gag_spuma (HMM E-Value=2.7)
          Length = 810

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 180 FYPLDFTFVCPTEIIAFSERADDF 251
           F P+    VCPT+ +AF++  D F
Sbjct: 400 FPPIQEDTVCPTQRVAFADHVDTF 423


>SB_16479| Best HMM Match : Cyclin_N (HMM E-Value=5.9e-23)
          Length = 392

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = -2

Query: 272 HLAPDLTEVISSLRESDYLCRAYEREIKRIEE*HDVFPLKIREGDVFELSVDDGCRLELW 93
           HL PD+ ++ +   +   +    E     ++   ++FPL++      EL++    R  L 
Sbjct: 157 HLPPDVVDIDADKTDPFQVAEYAEEIFLNMKRRENLFPLELYMEKQKELTI--SMRAILV 214

Query: 92  SWLSQLQRHSVEIY-DSLFEMSRKLRN 15
            WL ++Q  S E+Y ++L+   R L N
Sbjct: 215 DWLVEVQ-ESFELYHETLYLGVRVLDN 240


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,534,635
Number of Sequences: 59808
Number of extensions: 272315
Number of successful extensions: 855
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)