Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K13
         (531 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin ...   249   8e-67
Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical pr...   209   1e-54
AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical...    56   2e-08
AL132904-14|CAC35847.2|  258|Caenorhabditis elegans Hypothetical...    30   1.2  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    28   3.6  
Z31590-1|CAA83461.1|  605|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z29095-4|CAA82348.3|  444|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AF242767-1|AAG36874.1|  258|Caenorhabditis elegans SF2 protein.        27   6.3  
Z81070-10|CAB03004.1|  163|Caenorhabditis elegans Hypothetical p...    27   8.4  

>U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin
           protein 2 protein.
          Length = 195

 Score =  249 bits (610), Expect = 8e-67
 Identities = 115/149 (77%), Positives = 132/149 (88%)
 Frame = +3

Query: 84  KPAPQFKTTAVVNGEFKDVALSDFKGKYVVLFFYPLDFTFVCPTEIIAFSERADDFRKIG 263
           KPAPQFKT AVV+GEF DV+LSD+KGKYVVLFFYPLDFTFVCPTEIIAFS+RA++F+ I 
Sbjct: 8   KPAPQFKTQAVVDGEFVDVSLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKAIN 67

Query: 264 CEVIAASTDSHFTHLAWINTSRKQGGLGPMNIPIISDKSHRISRDYGVLDEETGIPFRGL 443
             V+AASTDS F+HLAWIN  RK GGLG MNIP+++D +H+ISRDYGVL E+ GI FRGL
Sbjct: 68  TVVLAASTDSVFSHLAWINQPRKHGGLGEMNIPVLADTNHQISRDYGVLKEDEGIAFRGL 127

Query: 444 FIIDDKQNLRQITVNDLPVGRSVEETLRL 530
           FIID  QNLRQIT+NDLPVGRSV+ETLRL
Sbjct: 128 FIIDPSQNLRQITINDLPVGRSVDETLRL 156


>Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical
           protein R07E5.2 protein.
          Length = 226

 Score =  209 bits (510), Expect = 1e-54
 Identities = 91/154 (59%), Positives = 123/154 (79%)
 Frame = +3

Query: 69  PLQLTKPAPQFKTTAVVNGEFKDVALSDFKGKYVVLFFYPLDFTFVCPTEIIAFSERADD 248
           PL      P FK TAVV+G+FK ++  D+KGK++V+FFYPLDFTFVCPTEIIA+ +RA++
Sbjct: 32  PLGPKNTVPAFKGTAVVDGDFKVISDQDYKGKWLVMFFYPLDFTFVCPTEIIAYGDRANE 91

Query: 249 FRKIGCEVIAASTDSHFTHLAWINTSRKQGGLGPMNIPIISDKSHRISRDYGVLDEETGI 428
           FR +G EV+A S DSHF+HLAW+NT RK GGLG M+IP+++D + +I+  +GVLD+E+G+
Sbjct: 92  FRSLGAEVVACSCDSHFSHLAWVNTPRKDGGLGDMDIPLLADFNKKIADSFGVLDKESGL 151

Query: 429 PFRGLFIIDDKQNLRQITVNDLPVGRSVEETLRL 530
            +RGLF+ID    +R  T NDLPVGRSV+ETLR+
Sbjct: 152 SYRGLFLIDPSGTVRHTTCNDLPVGRSVDETLRV 185


>AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.11 protein.
          Length = 231

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 11/144 (7%)
 Frame = +3

Query: 132 KDVALSDFKGK-YVVLFFYPLDFTFVCPTEIIAFSERADDFRKIGCEVIAASTDSHFTHL 308
           K+  L ++ G+ +++LF +P DFT VC TE+    + A +FRK   +++A S DS  TH 
Sbjct: 18  KNQTLHNYIGEQWLMLFSHPADFTPVCTTELAELVKLAPEFRKRHVQILAISIDSSETHR 77

Query: 309 AW---INTSRKQGGLGP-MNIPIISDKSHRISRDYGVLD------EETGIPFRGLFIIDD 458
            W   IN+  +    G  +   II+D    I  + G++D      E   +  R + +   
Sbjct: 78  DWAKDINSVAQLSNCGSHLPFEIIADTDRSICTELGMIDPDEMNSEGICLSARAVMLFGP 137

Query: 459 KQNLRQITVNDLPVGRSVEETLRL 530
            + L+   +     GR+  E LR+
Sbjct: 138 DKKLKSKILYPATFGRNFVEILRM 161


>AL132904-14|CAC35847.2|  258|Caenorhabditis elegans Hypothetical
           protein Y111B2A.18 protein.
          Length = 258

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = -2

Query: 449 DEESAEGDAGLLVE--DAVIARDAVRLVAYYRYVHGTETALFTGGVDPSQVGEVRVRGGG 276
           D +S  G A   VE  D   A DAVR    Y +        FT GV P   G   ++ GG
Sbjct: 39  DIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGPGGRPLQDGG 98

Query: 275 DHLAPD 258
           DH   D
Sbjct: 99  DHRGGD 104


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
           protein C08G9.2 protein.
          Length = 2224

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
 Frame = +3

Query: 210 PTEIIAFSERADDFRKIGCEV-IAASTDSHF-THLAWINTSRKQGGLGPMNIPIISDKSH 383
           P E + F ER   F  I C++      D H+ + +A    SR+Q  +     P +  K  
Sbjct: 265 PNEFVPFCERNGRFSSIQCDIQFCWCVDVHYGSEIAGTRISREQRRIDMCREPRLCTKKC 324

Query: 384 RISRDYGVLDEETGIPFRGLFIIDDKQNL 470
                +G + +  G P      +D  +N+
Sbjct: 325 HNQCTHGHVMDIFGCPIASCSCVDICRNV 353


>Z31590-1|CAA83461.1|  605|Caenorhabditis elegans Hypothetical
           protein R01H10.3a protein.
          Length = 605

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 290 VRGGGDHLAPDLTEVISSLRESDYLCRAYEREIKRIEE 177
           V    DH+  ++ E++  L +   + R +ER I+ +EE
Sbjct: 555 VSAASDHVPQNMDELLEDLMKMKAVLRQHERRIRMLEE 592


>Z29095-4|CAA82348.3|  444|Caenorhabditis elegans Hypothetical
           protein R10E11.5 protein.
          Length = 444

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 36  FEQTIINFNRMPLQLTKPAPQFKTTAVVNGEFKDVA 143
           F+   I FN  P+ +TKPA + +   V+  +  D+A
Sbjct: 114 FKAAPIRFNAPPVPITKPAKKEENRHVITSKDDDIA 149


>AF242767-1|AAG36874.1|  258|Caenorhabditis elegans SF2 protein.
          Length = 258

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
 Frame = -2

Query: 449 DEESAEGDAGLLVE--DAVIARDAVRLVAYYRYVHGTETALFTGGVDPSQVGEVRVRGGG 276
           D +S  G A   VE  D   A DAVR    Y +        FT GV P       ++ GG
Sbjct: 39  DIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGPSGRPLQDGG 98

Query: 275 DHLAPD 258
           DH   D
Sbjct: 99  DHRGGD 104


>Z81070-10|CAB03004.1|  163|Caenorhabditis elegans Hypothetical
           protein F26E4.12 protein.
          Length = 163

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +3

Query: 114 VVNGEFKDVALSDFKGKYVVLFFYPLDFTFVCPTEIIAFSERADDFRKIGCEVIA 278
           V N    DV+LSD+KGK V++         +         E  D ++K G EV+A
Sbjct: 9   VKNANGDDVSLSDYKGK-VLIIVNVASQCGLTNKNYTQLKELLDVYKKDGLEVLA 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,611,690
Number of Sequences: 27780
Number of extensions: 195826
Number of successful extensions: 660
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)