Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K13
         (531 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.1  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   3.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   3.4  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    22   3.4  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   3.4  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           22   4.5  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 108  TAVVNGEFKDVALSDF 155
            T +++  FKDV LSDF
Sbjct: 1401 TPIMDAHFKDVKLSDF 1416


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 168 VVLFFYPLDFTFVCPTEIIAFSERADDFRKIGCEVIA 278
           V +   P++  F  P E     ERAD  R++ C++++
Sbjct: 15  VAIMAAPVEDEFE-PLEHFENEERADRHRRVTCDLLS 50


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 514 STDRPTGRSLTVICRRFCLSSM 449
           ST+R    S+ +IC   C+S +
Sbjct: 280 STERMIAASVNLICHILCMSDL 301


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 168 VVLFFYPLDFTFVCPTEIIAFSERADDFRKIGCEVIA 278
           V +   P++  F  P E     ERAD  R++ C++++
Sbjct: 15  VAIMAAPVEDEFE-PLEHFENEERADRHRRVTCDLLS 50


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -2

Query: 236 LRESDYLCRAYEREIKRIEE*HDVFPLKIREGDVFELSVDDG 111
           ++ S    R Y+RE++  +     FP+K      FE  +++G
Sbjct: 288 VKNSGQWLREYDRELEDFDGRLFEFPIKFVPSYPFEEDINEG 329


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 210 PTEIIAFSERADDFRKIGCEVIA 278
           P E     ERAD  R++ C++++
Sbjct: 3   PLEHFENEERADRHRRVTCDLLS 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,272
Number of Sequences: 438
Number of extensions: 2112
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)