Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_K12
(304 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc... 139 7e-35
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa... 139 7e-35
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz... 37 7e-04
SPAC1782.11 |met14||adenylyl-sulfate kinase |Schizosaccharomyces... 26 1.4
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 1.8
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 24 4.3
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo... 24 4.3
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 24 5.6
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 24 5.6
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi... 24 5.6
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 23 7.5
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 23 9.9
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 23 9.9
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 23 9.9
>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 139 bits (337), Expect = 7e-35
Identities = 64/84 (76%), Positives = 74/84 (88%)
Frame = +1
Query: 10 FSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVA 189
F+GVDIRV V GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK E+K L+ YDR+LLVA
Sbjct: 57 FAGVDIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVA 116
Query: 190 DPRRCEPKKFGGPGARARYQKSYR 261
DPRR EPKKFGG GARAR QKSYR
Sbjct: 117 DPRRMEPKKFGGHGARARQQKSYR 140
>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 140
Score = 139 bits (337), Expect = 7e-35
Identities = 64/84 (76%), Positives = 74/84 (88%)
Frame = +1
Query: 10 FSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVA 189
F+GVDIRV V GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK E+K L+ YDR+LLVA
Sbjct: 57 FAGVDIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVA 116
Query: 190 DPRRCEPKKFGGPGARARYQKSYR 261
DPRR EPKKFGG GARAR QKSYR
Sbjct: 117 DPRRMEPKKFGGHGARARQQKSYR 140
>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 36.7 bits (81), Expect = 7e-04
Identities = 28/75 (37%), Positives = 38/75 (50%)
Frame = +1
Query: 22 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 201
++ TV GGG Q A+ AISK+LI + E S K+ V D ++ D R+
Sbjct: 64 NVWATVHGGGPTGQSGAVHAAISKSLI------LQEPSLKQ-----VIKDTHCVLNDKRK 112
Query: 202 CEPKKFGGPGARARY 246
E KK G P AR +Y
Sbjct: 113 VERKKTGQPKARKKY 127
>SPAC1782.11 |met14||adenylyl-sulfate kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 25.8 bits (54), Expect = 1.4
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 7 GFSGVDIRVTVKGGGHVAQVYAIRQAIS-KALIAFYQKYVDEASKKEIKD 153
GFS D ++ GHVA+++A ++ + I+ Y+K D+A + KD
Sbjct: 73 GFSEQDRNENIRRIGHVAKLFADACVVAVTSFISPYRKDRDQAREFHKKD 122
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.4 bits (53), Expect = 1.8
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = -3
Query: 65 TCATCPPPFTVTLISTP 15
T +CPPP T+ +++ P
Sbjct: 184 TSTSCPPPTTILIVTVP 200
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 24.2 bits (50), Expect = 4.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 135 RCFVYIFLVESDKGFRDGLSDCINLCNMSTTFYSHSNIH 19
+C V + V+ +KG R LS I N+ +T N H
Sbjct: 318 KCLVSLLFVDGEKGLRSELSQ-IPTENIDSTTDRFDNYH 355
>SPAC637.11 |suv3||ATP-dependent RNA helicase
Suv3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 24.2 bits (50), Expect = 4.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 111 VESDKGFRDGLSDCINLCNMSTTF 40
+ +D F +S + +CN+STTF
Sbjct: 231 IRNDYPFPQVVSCTVEMCNLSTTF 254
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 23.8 bits (49), Expect = 5.6
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2
Query: 90 RDGLSDCINLCNMSTTFYSHSNIHT 16
RD +CI +CNM + IHT
Sbjct: 685 RDAFDNCITVCNMEN--FDPLGIHT 707
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 23.8 bits (49), Expect = 5.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 90 RDGLSDCINLCNMSTTFYSHSNIHT 16
RD ++CI +CNM + IHT
Sbjct: 299 RDAANNCITVCNMEN--FDPLGIHT 321
>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
Sec14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 286
Score = 23.8 bits (49), Expect = 5.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 118 YVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGG 225
++DEA+ K+I + Y +LL P P K GG
Sbjct: 226 FLDEATVKKIHILGSNYKSALLEQIPADNLPAKLGG 261
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 23.4 bits (48), Expect = 7.5
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 25 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKE 144
IR + G G QVY A S L+A Q +D S+ +
Sbjct: 395 IRGALIGSGSFGQVYLGMNASSGELMAVKQVILDSVSESK 434
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 23.0 bits (47), Expect = 9.9
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 43 GGGHVAQVYAIRQAISKALIAFYQKYVDEASKKE--IKDILV 162
G G VY+ RQ + +A + +++ KKE + +ILV
Sbjct: 393 GQGASGDVYSARQVGTNLSVAIKKMNINQQPKKEFIVNEILV 434
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 23.0 bits (47), Expect = 9.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -2
Query: 72 CINLCNMSTTFYSHSNIHTREPS 4
C N STT++ SN H PS
Sbjct: 484 CRNCVERSTTWFIESNYHDGLPS 506
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 23.0 bits (47), Expect = 9.9
Identities = 6/24 (25%), Positives = 14/24 (58%)
Frame = -1
Query: 259 GRISGIWHGRLDHRISWARNDEGQ 188
G++ +W+ + + W R+ +GQ
Sbjct: 11 GKLKKLWNDTKNDYLEWERSQQGQ 34
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,338,885
Number of Sequences: 5004
Number of extensions: 23803
Number of successful extensions: 85
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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