Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_K12
(304 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 144 9e-36
11_01_0155 - 1287003-1287452 144 9e-36
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 32 0.099
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 30 0.40
03_01_0151 + 1206555-1206998,1207112-1207543 28 1.2
11_01_0523 - 4109070-4109984,4110532-4110936 28 1.6
01_03_0227 + 13967966-13968559 28 1.6
03_05_0077 - 20547070-20547108,20547407-20547697 27 2.1
12_02_1216 + 27077570-27078313 27 2.8
12_02_0814 - 23410278-23411854,23411933-23412166,23412688-234127... 27 3.7
10_01_0007 - 79867-79950,80258-80303,80409-80641,80765-80836,811... 26 4.9
08_01_0432 + 3782594-3783027,3783678-3783759,3784067-3784117,378... 26 4.9
07_03_1550 + 27641099-27641288,27641433-27641646,27641738-276418... 26 4.9
04_04_0524 - 25916869-25916876,25917352-25917506,25917712-259178... 26 4.9
02_05_0056 + 25461423-25461708,25461986-25462026,25466047-254660... 26 4.9
01_01_0755 - 5827893-5829764 26 4.9
03_05_0938 - 28978696-28978809,28978942-28979028,28979124-289792... 26 6.5
01_06_1199 + 35355690-35355732,35355793-35355930,35356366-353563... 26 6.5
09_04_0524 + 18321110-18323978,18324098-18324576 25 8.6
09_04_0402 - 17304828-17305622 25 8.6
01_01_0754 - 5823076-5823089,5823797-5823911,5823992-5824045,582... 25 8.6
>12_01_0152 - 1168928-1169377
Length = 149
Score = 144 bits (350), Expect = 9e-36
Identities = 63/84 (75%), Positives = 76/84 (90%)
Frame = +1
Query: 10 FSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVA 189
F +D+R+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVA
Sbjct: 66 FKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVA 125
Query: 190 DPRRCEPKKFGGPGARARYQKSYR 261
DPRRCEPKKFGG GARAR+QKSYR
Sbjct: 126 DPRRCEPKKFGGRGARARFQKSYR 149
>11_01_0155 - 1287003-1287452
Length = 149
Score = 144 bits (350), Expect = 9e-36
Identities = 63/84 (75%), Positives = 76/84 (90%)
Frame = +1
Query: 10 FSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVA 189
F +D+R+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVA
Sbjct: 66 FKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVA 125
Query: 190 DPRRCEPKKFGGPGARARYQKSYR 261
DPRRCEPKKFGG GARAR+QKSYR
Sbjct: 126 DPRRCEPKKFGGRGARARFQKSYR 149
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 31.9 bits (69), Expect = 0.099
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = +1
Query: 22 DIRVTVKGGGHVAQVYAIRQAISKAL 99
D+ TVKGGG QV AIR IS+AL
Sbjct: 347 DVTCTVKGGGVSGQVGAIRLGISRAL 372
>04_03_0024 -
9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 29.9 bits (64), Expect = 0.40
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +3
Query: 57 CTGLCNQTSHL*SPYRFLPEICRRSI*EGDQRHSSSIRQKFAGR*PSSLRAQEIRWSRRP 236
CTG+ Q S S Y F +I + + G+ + S K R +++R ++ + RRP
Sbjct: 725 CTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNNNNIRTKKRYFLRRP 784
Query: 237 CQIP 248
++P
Sbjct: 785 VRLP 788
>03_01_0151 + 1206555-1206998,1207112-1207543
Length = 291
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 1 ARGFSGVDIRVTVKGGGHV 57
ARG SGVD+ T GGHV
Sbjct: 208 ARGGSGVDVEATAAVGGHV 226
>11_01_0523 - 4109070-4109984,4110532-4110936
Length = 439
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 43 GGGHVAQVYAIRQAISKALIAFY 111
GGG V +++A++KAL+AFY
Sbjct: 48 GGGGFFDVGRLKEALAKALVAFY 70
>01_03_0227 + 13967966-13968559
Length = 197
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 213 EIRWSRRPCQIPEILPLISF 272
E RW+RRP Q+P + +SF
Sbjct: 71 EQRWTRRPTQVPPPITAVSF 90
>03_05_0077 - 20547070-20547108,20547407-20547697
Length = 109
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 141 GDQRHSSSIRQKFAGR*PSSLRAQEIRWSRRPCQ 242
GDQR S + +GR L E W+RR C+
Sbjct: 4 GDQRGDSPSSHELSGRLEGILADGEAPWARRACK 37
>12_02_1216 + 27077570-27078313
Length = 247
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 89 EMACLIA*TCATCPPPFTVTLISTPENPR 3
E A +A +C TC PP T S + PR
Sbjct: 27 ECAVDLASSCCTCAPPATTAASSRKKRPR 55
>12_02_0814 -
23410278-23411854,23411933-23412166,23412688-23412725,
23412872-23412948
Length = 641
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -1
Query: 301 IETIPNDAN*NDINGRIS-GIWHGRLDHRISWARNDEGQRP 182
+ T ND + +D+ +++ W GR+D W G RP
Sbjct: 465 LSTASNDEDDDDVPRQVTFSCWAGRIDGTGPWTSKQGGGRP 505
>10_01_0007 -
79867-79950,80258-80303,80409-80641,80765-80836,
81135-81230,81506-81607,81684-82349
Length = 432
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 4 RGFSGVDIRVTVKGGGHVAQVYAIRQAIS 90
R +S TVKGGGH A Y +Q ++
Sbjct: 393 RSYSNNLTFATVKGGGHTAPEYMPKQCLA 421
>08_01_0432 +
3782594-3783027,3783678-3783759,3784067-3784117,
3784279-3784514,3785008-3785058,3790905-3791106,
3791695-3791977,3792617-3792687
Length = 469
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 123 RRSI*EGDQRHSSSIRQKFAGR*PSSLRAQEIRWSRRPC 239
R ++ G HSS I ++ R P + AQE+R R C
Sbjct: 310 RHAVTTGSVPHSSGILRQQIRRSPPTFTAQELRAKERFC 348
>07_03_1550 +
27641099-27641288,27641433-27641646,27641738-27641843,
27642213-27642257,27642275-27642540,27642980-27642991,
27643201-27643480,27643716-27643823,27644276-27644362,
27644448-27644552,27644995-27645125,27645249-27645309
Length = 534
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 31 VTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKD 153
VT G G VA + R ++ L+ + + V E +KEI D
Sbjct: 379 VTAAGSGCVAALSVERYLVANDLLVEFHQPVREEKEKEITD 419
>04_04_0524 -
25916869-25916876,25917352-25917506,25917712-25917841,
25918013-25918094,25918180-25918213,25918271-25918327,
25918686-25918791,25920755-25920881
Length = 232
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +2
Query: 206 SPRNSVVQAPVPDTRNPTVNIISICIVWYRL 298
SPR + P N +I+ +C++WY L
Sbjct: 24 SPRQAYASPSPPAPHNSGNDILMLCLLWYIL 54
>02_05_0056 +
25461423-25461708,25461986-25462026,25466047-25466083,
25466451-25466594,25466882-25466974,25467067-25467155,
25467241-25467537,25467629-25467765,25467860-25467952,
25468061-25468166,25468243-25468395
Length = 491
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 31 VTVKGGGHVAQVYAIRQAIS 90
VT++G GH ++A RQA+S
Sbjct: 455 VTIRGAGHEVPLHAPRQALS 474
>01_01_0755 - 5827893-5829764
Length = 623
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/38 (23%), Positives = 19/38 (50%)
Frame = +1
Query: 7 GFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKY 120
GFSG+D + H++ ++ + + FYQ++
Sbjct: 413 GFSGLDGQFVTSASRHISATGLVKSSYGEVTTNFYQRF 450
>03_05_0938 -
28978696-28978809,28978942-28979028,28979124-28979256,
28979592-28979865,28980242-28980368,28980523-28980773,
28980854-28980935
Length = 355
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 236 RAPGPPNFLGSQRRGSATSKLL 171
RAPGPP + R G A +K+L
Sbjct: 25 RAPGPPRGPNAPRAGGAPAKVL 46
>01_06_1199 +
35355690-35355732,35355793-35355930,35356366-35356389,
35356450-35356587,35356974-35357056,35358881-35358922,
35359151-35359231,35359319-35359414,35359530-35359736,
35359810-35359963,35360170-35360373,35361037-35361921,
35362025-35362071
Length = 713
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 91 KALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 219
KALI Y K + + + LVQ S++ P+ +P +F
Sbjct: 118 KALIESYNKEIVDKHNTSNESDLVQGQVSIITGTPKAFQPSEF 160
>09_04_0524 + 18321110-18323978,18324098-18324576
Length = 1115
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 43 GGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDR 174
G G A V+ +RQA+S A + ++ D + K++ +L + R
Sbjct: 1026 GAGADADVHEMRQAMSVAALCVARRADDRPAMKDVVALLKEIRR 1069
>09_04_0402 - 17304828-17305622
Length = 264
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 138 EGDQRHSSSIR-QKFAGR*PSSLRAQEIRWSRRPCQI 245
E ++R R F+ PS+LR Q RW RR Q+
Sbjct: 172 EREKREQQRRRPHSFSAHGPSALREQRERWRRRRGQL 208
>01_01_0754 -
5823076-5823089,5823797-5823911,5823992-5824045,
5825629-5827251
Length = 601
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/37 (24%), Positives = 17/37 (45%)
Frame = +1
Query: 10 FSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKY 120
FS +D R G H++ + + + FYQ++
Sbjct: 407 FSALDGRFVTSAGRHISATGWVNSSYGNVMTTFYQRF 443
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,187,587
Number of Sequences: 37544
Number of extensions: 170850
Number of successful extensions: 497
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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