Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_K12
(304 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical pr... 139 3e-34
Z93372-4|CAB07546.1| 301|Caenorhabditis elegans Hypothetical pr... 31 0.16
U41991-8|AAA83348.2| 500|Caenorhabditis elegans Hypothetical pr... 30 0.28
L11247-4|AAK84520.1| 392|Caenorhabditis elegans Hypothetical pr... 28 1.5
AL132949-22|CAB70112.2| 603|Caenorhabditis elegans Hypothetical... 27 2.0
Z78018-8|CAB01450.2| 405|Caenorhabditis elegans Hypothetical pr... 27 3.4
Z78014-3|CAB01430.2| 405|Caenorhabditis elegans Hypothetical pr... 27 3.4
AC024090-2|AAK67219.1| 658|Caenorhabditis elegans Hypothetical ... 27 3.4
Z78200-4|CAB01582.1| 289|Caenorhabditis elegans Hypothetical pr... 26 4.5
U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical pr... 26 4.5
U29157-1|AAA68423.4| 675|Caenorhabditis elegans Hypothetical pr... 26 4.5
Z68011-2|CAA92013.2| 381|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z50859-2|CAA90727.2| 524|Caenorhabditis elegans Hypothetical pr... 26 6.0
U39995-3|AAF99995.2| 572|Caenorhabditis elegans Hypothetical pr... 26 6.0
U00058-2|AAL02528.2| 832|Caenorhabditis elegans Hypothetical pr... 26 6.0
U41038-2|AAX88827.1| 635|Caenorhabditis elegans Serotonin/octop... 25 7.9
U41038-1|AAK29709.2| 683|Caenorhabditis elegans Serotonin/octop... 25 7.9
AF031415-1|AAC15778.1| 635|Caenorhabditis elegans serotonin rec... 25 7.9
AF031414-1|AAC15827.1| 683|Caenorhabditis elegans serotonin rec... 25 7.9
>Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical
protein T01C3.6 protein.
Length = 144
Score = 139 bits (337), Expect = 3e-34
Identities = 62/84 (73%), Positives = 73/84 (86%)
Frame = +1
Query: 10 FSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVA 189
F VDIR+ V GGGHVAQ+YA+RQA++KAL+A+Y KYVDE SK+E+K+I YD+SLLVA
Sbjct: 61 FQDVDIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVA 120
Query: 190 DPRRCEPKKFGGPGARARYQKSYR 261
DPRR E KKFGGPGARARYQKSYR
Sbjct: 121 DPRRRESKKFGGPGARARYQKSYR 144
>Z93372-4|CAB07546.1| 301|Caenorhabditis elegans Hypothetical
protein BE10.4 protein.
Length = 301
Score = 31.1 bits (67), Expect = 0.16
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 118 YVDEASKKEIKDILVQYDRSLLVADPRRCE 207
+ DE +KE+ D+ QYDRS+ + D R E
Sbjct: 151 FCDEVQQKEVGDLFHQYDRSIEIIDKVRHE 180
>U41991-8|AAA83348.2| 500|Caenorhabditis elegans Hypothetical
protein C42D4.2 protein.
Length = 500
Score = 30.3 bits (65), Expect = 0.28
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +1
Query: 10 FSGVDIRVTVKG---GGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSL 180
F G + R T+ G GG VA + + ++ L + +Q+Y+ +S + +Q +R+
Sbjct: 114 FGGNNKRTTLLGHSYGGTVASMLSFSTKVNTDL-SLFQQYISMSSPTNFDTLELQVERTY 172
Query: 181 LVADPRRCEPK 213
A+ C PK
Sbjct: 173 RFAEHANCLPK 183
>L11247-4|AAK84520.1| 392|Caenorhabditis elegans Hypothetical
protein F09G8.3 protein.
Length = 392
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 178 LLVADPRRCEPKKFGGPGARARY 246
LL DPR+ E K PGARA++
Sbjct: 365 LLTLDPRKNERSKVNQPGARAKW 387
>AL132949-22|CAB70112.2| 603|Caenorhabditis elegans Hypothetical
protein Y53F4B.25 protein.
Length = 603
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 150 RHSSSIRQKFAGR*PSSLRAQEIRWSRRPCQIPEILP 260
+H+S +R++ P L+ +R+ +P QIP + P
Sbjct: 203 KHNSPVRRQLVDPLPPLLQPSPVRFPAQPWQIPPLHP 239
>Z78018-8|CAB01450.2| 405|Caenorhabditis elegans Hypothetical
protein W07G4.6 protein.
Length = 405
Score = 26.6 bits (56), Expect = 3.4
Identities = 21/67 (31%), Positives = 28/67 (41%)
Frame = -2
Query: 207 LATTRVSDQQTSXXXXXXXXXXXLRCFVYIFLVESDKGFRDGLSDCINLCNMSTTFYSHS 28
L T R+S Q S + IF+V F +++ L N STTFYS S
Sbjct: 132 LRTMRLSTSQ-SIDDYTTYHRKAAIMIIPIFVVSLSTSFYSSVTNRYML-NDSTTFYSDS 189
Query: 27 NIHTREP 7
+H P
Sbjct: 190 VVHQLAP 196
>Z78014-3|CAB01430.2| 405|Caenorhabditis elegans Hypothetical
protein W07G4.6 protein.
Length = 405
Score = 26.6 bits (56), Expect = 3.4
Identities = 21/67 (31%), Positives = 28/67 (41%)
Frame = -2
Query: 207 LATTRVSDQQTSXXXXXXXXXXXLRCFVYIFLVESDKGFRDGLSDCINLCNMSTTFYSHS 28
L T R+S Q S + IF+V F +++ L N STTFYS S
Sbjct: 132 LRTMRLSTSQ-SIDDYTTYHRKAAIMIIPIFVVSLSTSFYSSVTNRYML-NDSTTFYSDS 189
Query: 27 NIHTREP 7
+H P
Sbjct: 190 VVHQLAP 196
>AC024090-2|AAK67219.1| 658|Caenorhabditis elegans Hypothetical
protein C52E2.4 protein.
Length = 658
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -1
Query: 169 RIELECL*SPS*MLRLHISGRKR 101
R L+C +PS +LRLHISG R
Sbjct: 139 RFALKCF-NPSKLLRLHISGSNR 160
>Z78200-4|CAB01582.1| 289|Caenorhabditis elegans Hypothetical
protein T04H1.5 protein.
Length = 289
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +1
Query: 16 GVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKE 144
GVDI+ KG GH +V A+++ ++ + A QK ++A+K E
Sbjct: 107 GVDIKANRKGLGH--EVEAVQER-NERVEAVMQKMKEQAAKHE 146
>U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical protein
F28B4.3 protein.
Length = 2229
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 25 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEA 132
I++TV G G QVY +++AL FY Y ++
Sbjct: 1138 IQLTVFGYGTTIQVYNGNGVLAEALELFYDDYTGQS 1173
>U29157-1|AAA68423.4| 675|Caenorhabditis elegans Hypothetical
protein C34D10.2 protein.
Length = 675
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 241 WHGRLDHRISWARNDEGQRPANFCRIELEC 152
WH + DH +S + ++ ++PA CR C
Sbjct: 190 WHSQ-DHVLSCYKTEQCRKPARLCRQGYAC 218
>Z68011-2|CAA92013.2| 381|Caenorhabditis elegans Hypothetical
protein T21B6.2 protein.
Length = 381
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 88 SKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFG 222
SK YQ+ V E KK +I V+Y R L + K+G
Sbjct: 143 SKIQCPAYQRIVAEERKKIESEINVKYKRELEIISNHTSHQTKYG 187
>Z50859-2|CAA90727.2| 524|Caenorhabditis elegans Hypothetical
protein T26C5.2 protein.
Length = 524
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 99 KGFRDGLSDCINLCNMSTTFYSHSN 25
KG+ DG+ CI LC +ST F S+
Sbjct: 423 KGY-DGMQLCIELCVLSTKFTCRSS 446
>U39995-3|AAF99995.2| 572|Caenorhabditis elegans Hypothetical
protein M60.2 protein.
Length = 572
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 121 VDEA--SKKEIKDILVQYDRSLLVADPRRCEPKKFG 222
VDE+ +KK+ D++ Y + L AD + EP G
Sbjct: 353 VDESIFTKKQYADLITTYTQDLFTADVCKAEPAMGG 388
>U00058-2|AAL02528.2| 832|Caenorhabditis elegans Hypothetical
protein W03A5.1 protein.
Length = 832
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 135 RCFVYIFLVESDKGFRDGLSDCINL 61
RCF + L E DKG D L + I +
Sbjct: 231 RCFFLMILTERDKGQDDKLEELIKI 255
>U41038-2|AAX88827.1| 635|Caenorhabditis elegans
Serotonin/octopamine receptor familyprotein 1, isoform b
protein.
Length = 635
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 137 RRRSKTF*FNTTEVCWSLTLVVASP 211
R RSKT F + W +TL+V+ P
Sbjct: 117 RNRSKTLIFIKIAIVWVVTLLVSCP 141
>U41038-1|AAK29709.2| 683|Caenorhabditis elegans
Serotonin/octopamine receptor familyprotein 1, isoform a
protein.
Length = 683
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 137 RRRSKTF*FNTTEVCWSLTLVVASP 211
R RSKT F + W +TL+V+ P
Sbjct: 165 RNRSKTLIFIKIAIVWVVTLLVSCP 189
>AF031415-1|AAC15778.1| 635|Caenorhabditis elegans serotonin
receptor protein.
Length = 635
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 137 RRRSKTF*FNTTEVCWSLTLVVASP 211
R RSKT F + W +TL+V+ P
Sbjct: 117 RNRSKTLIFIKIAIVWVVTLLVSCP 141
>AF031414-1|AAC15827.1| 683|Caenorhabditis elegans serotonin
receptor protein.
Length = 683
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 137 RRRSKTF*FNTTEVCWSLTLVVASP 211
R RSKT F + W +TL+V+ P
Sbjct: 165 RNRSKTLIFIKIAIVWVVTLLVSCP 189
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,590,952
Number of Sequences: 27780
Number of extensions: 141241
Number of successful extensions: 421
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -