Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K12
         (304 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   0.63 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   3.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   4.4  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    20   5.8  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.4 bits (48), Expect = 0.63
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 90  RDGLSDCINLCNMSTTFYSHSNIHTRE 10
           RD   +CI +CNM         IHT E
Sbjct: 49  RDAYDNCITVCNMENV--DPLGIHTGE 73


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 64  PVQHVHHLLQSL*YPHQR 11
           P  H HH  QSL + H R
Sbjct: 350 PHHHHHHQTQSLQHLHYR 367


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -2

Query: 78  SDCINLCNMSTTFYSHSNIHTREPS 4
           S C N  N     Y+H++   R  S
Sbjct: 412 SRCANFDNQDNNHYNHNHNQARHSS 436


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
          protein.
          Length = 69

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -2

Query: 72 CINLCNMSTTFYSHSNIH 19
          C+N   +++   SHSN++
Sbjct: 26 CVNKSMLNSHLKSHSNVY 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,289
Number of Sequences: 438
Number of extensions: 1532
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)