Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_K12
(304 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C) 150 2e-37
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same... 150 2e-37
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi... 144 8e-36
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con... 33 0.037
At1g11480.1 68414.m01319 eukaryotic translation initiation facto... 29 0.45
At3g24255.1 68416.m03045 expressed protein 29 0.79
At1g04360.1 68414.m00426 zinc finger (C3HC4-type RING finger) fa... 27 1.8
At1g43570.1 68414.m05001 hypothetical protein 27 3.2
At5g48630.1 68418.m06014 cyclin family protein similar to SP|P55... 26 4.2
At2g41680.1 68415.m05149 thioredoxin reductase, putative / NADPH... 26 4.2
At5g18480.1 68418.m02179 glycogenin glucosyltransferase (glycoge... 25 7.4
At3g44240.1 68416.m04747 CCR4-NOT transcription complex protein,... 25 9.7
>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
Length = 146
Score = 150 bits (364), Expect = 2e-37
Identities = 67/84 (79%), Positives = 79/84 (94%)
Frame = +1
Query: 10 FSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVA 189
F+GV++R+ V GGGH +QVYAIRQ+I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLVA
Sbjct: 63 FAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVA 122
Query: 190 DPRRCEPKKFGGPGARARYQKSYR 261
DPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 123 DPRRCEPKKFGGRGARSRYQKSYR 146
>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
GB:Q42340
Length = 146
Score = 150 bits (364), Expect = 2e-37
Identities = 67/84 (79%), Positives = 79/84 (94%)
Frame = +1
Query: 10 FSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVA 189
F+GV++R+ V GGGH +QVYAIRQ+I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLVA
Sbjct: 63 FAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVA 122
Query: 190 DPRRCEPKKFGGPGARARYQKSYR 261
DPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 123 DPRRCEPKKFGGRGARSRYQKSYR 146
>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
thaliana]
Length = 146
Score = 144 bits (350), Expect = 8e-36
Identities = 64/84 (76%), Positives = 78/84 (92%)
Frame = +1
Query: 10 FSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVA 189
F+GVD+R+ GGG+ ++VYAIRQ+I+KAL+A+YQKYVDE SKKEIKDIL++YDR+LLVA
Sbjct: 63 FAGVDMRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVA 122
Query: 190 DPRRCEPKKFGGPGARARYQKSYR 261
DPRRCE KKFGGPGARAR+QKSYR
Sbjct: 123 DPRRCESKKFGGPGARARFQKSYR 146
>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
contains Pfam profile PF00380: ribosomal protein S9
Length = 430
Score = 33.1 bits (72), Expect = 0.037
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +1
Query: 22 DIRVTVKGGGHVAQVYAIRQAISKAL 99
DI+ TVKGGG QV AI+ IS+AL
Sbjct: 362 DIKCTVKGGGTTGQVGAIQLGISRAL 387
>At1g11480.1 68414.m01319 eukaryotic translation initiation
factor-related contains weak similarity to
Swiss-Prot:P23588 eukaryotic translation initiation
factor 4B (eIF-4B) [Homo sapiens]
Length = 578
Score = 29.5 bits (63), Expect = 0.45
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 271 NDINGRISGIWHGRLDHRISWARNDEGQRP 182
N ++G S IW+GR + +S A N+ GQ P
Sbjct: 146 NSVSGNHSNIWNGRKE--VSVANNEPGQSP 173
>At3g24255.1 68416.m03045 expressed protein
Length = 836
Score = 28.7 bits (61), Expect = 0.79
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = -3
Query: 200 RRGSATSKLLSY*TRMSLISFLDASSTYFW*KAIRALEMACL 75
R G T++ LS+ R+ LIS + S T FW A R L AC+
Sbjct: 142 RIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFR-LPSACI 182
>At1g04360.1 68414.m00426 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 381
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 80 CLIA*TCATCPPPFTVTLISTPENPR 3
C + T +C FT+ LIS P +PR
Sbjct: 172 CPLCRTSVSCEASFTLDLISAPSSPR 197
>At1g43570.1 68414.m05001 hypothetical protein
Length = 348
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 203 QRRGSATSKLLSY*TRMSLISFLDASSTYFW*KAIR 96
+R S T + LSY R+ LI + S T FW A R
Sbjct: 19 KRISSWTGRFLSYCGRLQLIKSVLMSITNFWSSAFR 54
>At5g48630.1 68418.m06014 cyclin family protein similar to SP|P55168
Cyclin C {Gallus gallus}; contains Pfam profile PF00134:
Cyclin, N-terminal domain
Length = 253
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +1
Query: 70 AIRQAISKALIAFYQK--YVDEASKKEIKDIL 159
A + L+ FY K Y DE + EIKDIL
Sbjct: 97 AEESVVHAKLLVFYMKKLYADEKFRYEIKDIL 128
>At2g41680.1 68415.m05149 thioredoxin reductase, putative /
NADPH-dependent thioredoxin reductase, putative The last
2 exons encode thioredoxin. There is an EST match to
exons 5-7, and the distance between exon 7 and exon 8 is
only 90bp. It is unlikely this is two separate genes,
but more likely a hybrid protein.
Length = 529
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +1
Query: 31 VTVKGGGHVAQVYAIRQAIS-KALIAFYQKYVDEASKK-EIKDILVQYDRSL 180
VT G G +A + A R S L+ F+Q +EA K+ +D+ ++D +L
Sbjct: 374 VTAAGSGCIAALSAERYLTSNNLLVEFHQPQTEEAKKEFTQRDVQEKFDITL 425
>At5g18480.1 68418.m02179 glycogenin glucosyltransferase
(glycogenin)-related low similarity to glycogenin-1 from
Mus musculus [SP|Q9R062], Rattus norvegicus [SP|O08730],
Homo sapiens [SP|P46976]; contains Pfam profile PF01501:
Glycosyl transferase family 8
Length = 537
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 88 SKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGG 225
+K ++A V + SKK +K + ++ L+A+P + P +F G
Sbjct: 59 TKDMVALVSDGVSDYSKKLLKADGWKVEKISLLANPNQVHPTRFWG 104
>At3g44240.1 68416.m04747 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 239
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -1
Query: 268 DINGRISGIWHGRL-DHRISWARNDE 194
DINGRI G W D + ARN++
Sbjct: 58 DINGRIGGTWEINFSDFGVDDARNEK 83
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,211,090
Number of Sequences: 28952
Number of extensions: 132213
Number of successful extensions: 375
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 301317600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -