Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K11
         (364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    25   2.7  
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       25   3.6  
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar...    25   3.6  
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        25   3.6  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    25   3.6  
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   3.6  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    24   6.3  

>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 95  RENIVMPCALLNVLQYCSVPVISYLLLYTTIIT*GCQLVY 214
           RENI     LL   +  S P+I+YL +Y       C  +Y
Sbjct: 395 RENIFTLPNLLTFSRLLSAPLIAYLYIYDYTKAAACFFLY 434


>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = -2

Query: 186 IVVYNN----RYDITGTEQYCNTFNKAQGITIFSRDQVTKN 76
           +VVY+N    R+  T +     TF+K Q I +FS ++VT++
Sbjct: 77  VVVYHNKFFPRFIRTHSINSIRTFSKFQVIILFSIEKVTRS 117


>SPAC977.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = -2

Query: 186 IVVYNN----RYDITGTEQYCNTFNKAQGITIFSRDQVTKN 76
           +VVY+N    R+  T +     TF+K Q I +FS ++VT++
Sbjct: 77  VVVYHNKFFPRFIRTHSINSIRTFSKFQVIILFSIEKVTRS 117


>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = -2

Query: 186 IVVYNN----RYDITGTEQYCNTFNKAQGITIFSRDQVTKN 76
           +VVY+N    R+  T +     TF+K Q I +FS ++VT++
Sbjct: 77  VVVYHNKFFPRFIRTHSINSIRTFSKFQVIILFSIEKVTRS 117


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 198 PYVIIVVYNNRYDITGTEQYCNTFNKAQGITIFSRDQVTKNI 73
           PY       N Y ++  E+YC+ F K    + F   ++T++I
Sbjct: 339 PYEFGFETGNYYTLSNFEKYCDNFKK-NYFSKFKDSEITEDI 379


>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = -2

Query: 186 IVVYNN----RYDITGTEQYCNTFNKAQGITIFSRDQVTKN 76
           +VVY+N    R+  T +     TF+K Q I +FS ++VT++
Sbjct: 77  VVVYHNKFFPRFIRTHSINSIRTFSKFQVIILFSIEKVTRS 117


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -2

Query: 234 WIHHFH--QYTS*QPYVIIVVYNNRYDITGTEQYCNTFNKAQGITIFSR 94
           +IH FH  Q+    P V  +V   R D+   +QY + FN  QG+  ++R
Sbjct: 567 YIHIFHHIQFMLSIPCVAEIV---REDLKFLKQYADFFNLFQGMCPYTR 612


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,260,364
Number of Sequences: 5004
Number of extensions: 21015
Number of successful extensions: 38
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)