Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K11
         (364 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81489-11|CAJ30223.1|  323|Caenorhabditis elegans Hypothetical p...    26   7.0  
Z75955-16|CAN86627.1|  483|Caenorhabditis elegans Hypothetical p...    26   7.0  
Z75955-15|CAB00117.2|  484|Caenorhabditis elegans Hypothetical p...    26   7.0  
Z95559-6|CAB63363.1|  187|Caenorhabditis elegans Hypothetical pr...    26   9.3  

>Z81489-11|CAJ30223.1|  323|Caenorhabditis elegans Hypothetical
           protein C55A1.14 protein.
          Length = 323

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 107 VMPCALLNVLQYCSVPVISYLLLYTTII 190
           V PC  +N L +  +P+  +L  YT  I
Sbjct: 78  VFPCFKINTLSFYLLPIALFLTFYTLYI 105


>Z75955-16|CAN86627.1|  483|Caenorhabditis elegans Hypothetical
           protein R07B7.9b protein.
          Length = 483

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 195 KVVSLYIDENDESNIKFGAN*LIP 266
           K+VSL+I  ND  N+ FG+   IP
Sbjct: 290 KLVSLWIGTNDVGNLVFGSENPIP 313


>Z75955-15|CAB00117.2|  484|Caenorhabditis elegans Hypothetical
           protein R07B7.9a protein.
          Length = 484

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 195 KVVSLYIDENDESNIKFGAN*LIP 266
           K+VSL+I  ND  N+ FG+   IP
Sbjct: 291 KLVSLWIGTNDVGNLVFGSENPIP 314


>Z95559-6|CAB63363.1|  187|Caenorhabditis elegans Hypothetical
           protein Y41E3.13 protein.
          Length = 187

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 150 TEQYCNTFNKAQGITIFSRDQVT 82
           TE+ C+T ++  GI   S DQ+T
Sbjct: 154 TERTCSTLDEENGIFTVSNDQIT 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,849,755
Number of Sequences: 27780
Number of extensions: 115079
Number of successful extensions: 187
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)