Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K11
         (364 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   3.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   4.5  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              20   7.8  

>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -1

Query: 109 HNILSRSSYEEHSFSKIINYLAAPEHIMDNIHC 11
           +N +  ++Y +  +  IIN    P  +   IHC
Sbjct: 320 NNTIHNNNYNKKLYYNIINIEQIPVPVPVPIHC 352


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 65  RK*MFFVT*SRENIVMPCALLN 130
           R+ MF+V     N+++PC L+N
Sbjct: 211 RRPMFYVF----NLILPCILIN 228


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = +3

Query: 192 RKVVSLYIDENDESNI 239
           R++  +Y+DEN+ + +
Sbjct: 85  REIAEIYLDENEVNKL 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,318
Number of Sequences: 438
Number of extensions: 1746
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)