Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K10
         (424 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    27   1.2  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    26   2.8  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    25   3.7  
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po...    25   4.8  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   6.4  

>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 275 ITLILRTLYAIYTLIFYGKIHLLSL 349
           + L+L TL+ IYT  FY  + L  L
Sbjct: 296 LVLVLLTLFCIYTAAFYRSVRLARL 320


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = -3

Query: 416 NANVKFRAQMPRITRKSAYKH 354
           N  ++F+ Q+P ++R++ Y+H
Sbjct: 141 NLLIQFQIQVPNVSRRTVYRH 161


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 275 ITLILRTLYAIYTLIFYGKIHLLSL 349
           + L++ TL  IYT  FY  + L +L
Sbjct: 384 LVLVILTLLCIYTAAFYRSVRLAAL 408


>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 207 RISRFMIKHSQNLIQKNTNH 266
           +  +F++ HS+  I KN NH
Sbjct: 181 KFKKFVVNHSETDIDKNDNH 200


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = +3

Query: 138 YCTVIPRFTRGIHSEKNRVN*NSRISRFMIK-HSQNLIQKNTNHFN--QSL*F*EHFMQY 308
           Y +  P FTR +   +  +   + +SR   K HSQN ++ N + FN  ++L     F++Y
Sbjct: 558 YVSFGPSFTR-MQLSQLLILWKNALSRVPSKIHSQNFMETNADMFNRFEALQCLLSFLEY 616

Query: 309 ILLFFT 326
             + FT
Sbjct: 617 NKILFT 622


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,483,591
Number of Sequences: 5004
Number of extensions: 26943
Number of successful extensions: 50
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)