Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K10
         (424 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0445 + 17818190-17818874,17819730-17819749                       27   8.2  
07_03_0998 - 23214548-23214567,23215424-23216120                       27   8.2  
06_03_0333 - 19658344-19658363,19659286-19659916                       27   8.2  

>11_04_0445 + 17818190-17818874,17819730-17819749
          Length = 234

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 131 FILLYSNTPLYARDTFRKKSR*LK--FAHI 214
           F   YS+ PLY  D FR++ R  K  F HI
Sbjct: 76  FAKYYSDNPLYTDDQFRRRFRMRKHLFLHI 105


>07_03_0998 - 23214548-23214567,23215424-23216120
          Length = 238

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 131 FILLYSNTPLYARDTFRKKSR*LK--FAHI 214
           F   YS+ PLY  D FR++ R  K  F HI
Sbjct: 80  FAKYYSDNPLYTDDQFRRRFRMRKHLFLHI 109


>06_03_0333 - 19658344-19658363,19659286-19659916
          Length = 216

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 131 FILLYSNTPLYARDTFRKKSR*LK--FAHI 214
           F   YS+ PLY  D FR++ R  K  F HI
Sbjct: 80  FAKYYSDNPLYTDDQFRRRFRMRKHLFLHI 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,885,831
Number of Sequences: 37544
Number of extensions: 119003
Number of successful extensions: 175
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)