Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K10
         (424 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071243-1|AAL48865.1|  443|Drosophila melanogaster RE28421p pro...    31   0.63 
AE013599-1827|AAF58292.2|  443|Drosophila melanogaster CG13016-P...    31   0.63 
AY484405-1|AAR86939.1|  857|Drosophila melanogaster reverse tran...    27   7.8  
AY484404-1|AAR86938.1|  857|Drosophila melanogaster reverse tran...    27   7.8  
AF418572-1|AAL14648.1|  211|Drosophila melanogaster Orf1 protein.      27   7.8  

>AY071243-1|AAL48865.1|  443|Drosophila melanogaster RE28421p
           protein.
          Length = 443

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +3

Query: 243 LIQKNTNHFNQSL*F*EHFMQYILLFF-TEKYIYCLYIMFIRTLSRNARHL 392
           L Q +T H   ++   + +++Y+LL   T + IYCL ++ IR  +  +RHL
Sbjct: 81  LPQAHTRHM-VNIELIDPYLRYLLLILNTRRLIYCLLLVKIRKRNEKSRHL 130


>AE013599-1827|AAF58292.2|  443|Drosophila melanogaster CG13016-PA
           protein.
          Length = 443

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +3

Query: 243 LIQKNTNHFNQSL*F*EHFMQYILLFF-TEKYIYCLYIMFIRTLSRNARHL 392
           L Q +T H   ++   + +++Y+LL   T + IYCL ++ IR  +  +RHL
Sbjct: 81  LPQAHTRHM-VNIELIDPYLRYLLLILNTRRLIYCLLLVKIRKRNEKSRHL 130


>AY484405-1|AAR86939.1|  857|Drosophila melanogaster reverse
           transcriptase protein.
          Length = 857

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 201 NSRISRFMIKHSQNLIQKNTNHFNQS 278
           +++I   +IKH  NL+Q+ T H  ++
Sbjct: 104 HTKILNLLIKHKHNLLQEQTKHMEKA 129


>AY484404-1|AAR86938.1|  857|Drosophila melanogaster reverse
           transcriptase protein.
          Length = 857

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 201 NSRISRFMIKHSQNLIQKNTNHFNQS 278
           +++I   +IKH  NL+Q+ T H  ++
Sbjct: 104 HTKILNLLIKHKHNLLQEQTKHMEKA 129


>AF418572-1|AAL14648.1|  211|Drosophila melanogaster Orf1 protein.
          Length = 211

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 201 NSRISRFMIKHSQNLIQKNTNHFNQS 278
           +++I   +IKH  NL+Q+ T H  ++
Sbjct: 104 HTKILNLLIKHKHNLLQEQTKHMEKA 129


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,306,192
Number of Sequences: 53049
Number of extensions: 237250
Number of successful extensions: 383
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1292733852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)