Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K10
         (424 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   0.81 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   0.81 

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.8 bits (49), Expect = 0.81
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 36  TLFLYFN*KNSVLEIEIQNYQDIFLQIYF*VNLYYCTVIPRFTRGIHSEKN 188
           T F Y + K  +L+  IQ+   +F Q+Y  + +   TV    TR I    N
Sbjct: 653 TRFFYPDRKQVILKCNIQDMSFLFSQLYNALLILISTVYAVKTRKIPENFN 703


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 0.81
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 36  TLFLYFN*KNSVLEIEIQNYQDIFLQIYF*VNLYYCTVIPRFTRGIHSEKN 188
           T F Y + K  +L+  IQ+   +F Q+Y  + +   TV    TR I    N
Sbjct: 743 TRFFYPDRKQVILKCNIQDMSFLFSQLYNALLILISTVYAVKTRKIPENFN 793


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,893
Number of Sequences: 438
Number of extensions: 1818
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)