Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K09
         (465 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      26   3.3  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    26   3.3  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    25   4.3  
SPBC13G1.06c |isd11||iron sulfur cluster assembly protein Isd11|...    25   4.3  
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    25   4.3  
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces...    25   7.5  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    25   7.5  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    24   9.9  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    24   9.9  

>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 443 DISPAICKTSSLLSFREEDSSFLLQQHR 360
           D++P + K+   LSF +ED S ++++ R
Sbjct: 151 DLAPPLIKSDENLSFTDEDVSIIVRRLR 178


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 145 INKLKFQCPLTEVPNYNTSTFPEIKKYLPVNLE 243
           I K K +    ++P  + ST P ++KY P NLE
Sbjct: 3   IEKGKGRAMDIDLPLGSESTLPWVEKYRPANLE 35


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -2

Query: 422 KTSSLLSFREEDSSFLLQQHRLFHSS 345
           K++SLLSF+ +D S   ++ R F+S+
Sbjct: 199 KSNSLLSFKTDDDSITKRRLRSFNSA 224


>SPBC13G1.06c |isd11||iron sulfur cluster assembly protein
           Isd11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 102

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 268 RGTRLSDMLLNLLVNISLFQGMWMCCNLVLQSVD 167
           +G + S+ LL ++   S+  GM+   NLV++ +D
Sbjct: 52  QGIKDSEKLLEIIQRQSIINGMYNKRNLVVEGID 85


>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 404 IEGLRSCKWPGRYQV 448
           ++GL+  KWPGR Q+
Sbjct: 321 LDGLKYVKWPGRCQI 335


>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 409 FYRFVRKIHH 380
           FYRF+ K+HH
Sbjct: 162 FYRFIHKVHH 171


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 268 RGTRLSDMLLNLLVNISLFQGMWMCCNLVLQSVDTEI 158
           R   L    LN L++   F+G    C+++LQS    I
Sbjct: 167 RALHLEKKALNCLLSYFAFKGKLDICSVILQSYQLSI 203


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 214 IKKYLPVNLEAYQTNASL 267
           +K+Y PVNLE Y T + L
Sbjct: 236 LKQYSPVNLEKYLTKSWL 253


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -2

Query: 365 HRLFHSSRHYVIYIHFYMSLFFIRIQACASCTARDAFV*-YASKFTGKYFFIS 210
           HR + SS    +  + Y +  + R+Q    C +   ++  + +KFT  YFF+S
Sbjct: 625 HRAYKSSSRTHL-ANRYFTADYARLQINDMCVSWGLWLLVFGAKFTESYFFLS 676


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,934,254
Number of Sequences: 5004
Number of extensions: 38640
Number of successful extensions: 90
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)