Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K09
         (465 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0577 - 24011542-24011906,24012285-24012385,24013029-240132...    27   5.6  
12_02_0483 + 19546295-19546397,19547163-19547482,19547606-195486...    27   9.8  
07_03_1532 - 27519701-27520831                                         27   9.8  
07_01_1218 - 11633829-11634628,11634713-11635050,11635349-116354...    27   9.8  
05_04_0308 - 20081366-20082404,20082702-20083078,20084293-200846...    27   9.8  
01_01_1117 - 8846649-8847658,8847925-8848024,8848810-8848845           27   9.8  

>02_04_0577 -
           24011542-24011906,24012285-24012385,24013029-24013287,
           24014176-24014264,24015331-24015419
          Length = 300

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 386 SSFLLQQHRLFHSSRHY 336
           SS +L QH L+H+SRH+
Sbjct: 225 SSHILLQHSLYHASRHH 241


>12_02_0483 +
           19546295-19546397,19547163-19547482,19547606-19548611,
           19549890-19549985,19550500-19551551
          Length = 858

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -1

Query: 222 FLYFRE-CGCVVIWYFSQWTLK 160
           F+ F+E C  + +W+FS W LK
Sbjct: 658 FIRFKEGCEEIPLWFFSNWWLK 679


>07_03_1532 - 27519701-27520831
          Length = 376

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -1

Query: 222 FLYFRE-CGCVVIWYFSQWTLK 160
           F+ F+E C  + +W+FS W LK
Sbjct: 176 FIRFKEGCEEIPLWFFSNWWLK 197


>07_01_1218 -
           11633829-11634628,11634713-11635050,11635349-11635445,
           11635482-11635725,11636114-11636122
          Length = 495

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -1

Query: 222 FLYFRE-CGCVVIWYFSQWTLK 160
           F+ F+E C  + +W+FS W LK
Sbjct: 268 FIRFKEGCEEIPLWFFSNWWLK 289


>05_04_0308 -
           20081366-20082404,20082702-20083078,20084293-20084679,
           20085038-20086000
          Length = 921

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -1

Query: 222 FLYFRE-CGCVVIWYFSQWTLK 160
           F+ F+E C  + +W+FS W LK
Sbjct: 753 FIRFKEGCEEIPLWFFSNWWLK 774


>01_01_1117 - 8846649-8847658,8847925-8848024,8848810-8848845
          Length = 381

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -1

Query: 222 FLYFRE-CGCVVIWYFSQWTLK 160
           F+ F+E C  + +W+FS W LK
Sbjct: 278 FIRFKEGCEEIPLWFFSNWWLK 299


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,742,816
Number of Sequences: 37544
Number of extensions: 217737
Number of successful extensions: 549
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)