Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_K09
(465 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4) 31 0.47
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_42688| Best HMM Match : PB1 (HMM E-Value=0.12) 29 1.9
SB_48675| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_24696| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00023) 28 4.4
SB_3416| Best HMM Match : AWPM-19 (HMM E-Value=2.9) 27 5.8
SB_34538| Best HMM Match : NMN_transporter (HMM E-Value=5.8) 27 7.7
SB_27463| Best HMM Match : C_tripleX (HMM E-Value=0.11) 27 7.7
>SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)
Length = 435
Score = 31.1 bits (67), Expect = 0.47
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 381 ISLATAPFVPFFTPLCNLYPFLYVLVFYSH 292
IS T F P FT L +LYP Y + +SH
Sbjct: 220 ISYRTIHFSPLFTYLIHLYPISYRTIHFSH 249
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 381 ISLATAPFVPFFTPLCNLYPFLYVLVFYS 295
IS T F P FT L NLYP Y + +S
Sbjct: 360 ISYRTIHFSPLFTYLINLYPISYRTIHFS 388
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -1
Query: 381 ISLATAPFVPFFTPLCNLYPFLYVLVFYSH 292
IS T F P FT L LYP Y + +SH
Sbjct: 140 ISYRTIHFSPLFTYLICLYPISYRTIHFSH 169
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 381 ISLATAPFVPFFTPLCNLYPFLYVLVFYS 295
IS T F P FT L +LYP Y + +S
Sbjct: 60 ISYRTIHFSPLFTYLIHLYPISYRTIHFS 88
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 381 ISLATAPFVPFFTPLCNLYPFLYVLVFYS 295
IS T F P FT L +LYP Y + +S
Sbjct: 200 ISYRTIHFSPLFTYLIHLYPISYRTIHFS 228
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 381 ISLATAPFVPFFTPLCNLYPFLYVLVFYS 295
IS T F P FT L +LYP Y + +S
Sbjct: 280 ISYRTIHFSPLFTYLIHLYPISYRTIHFS 308
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 381 ISLATAPFVPFFTPLCNLYPFLYVLVFYS 295
IS T F P FT L +LYP Y + +S
Sbjct: 340 ISYRTIHFSPLFTYLIHLYPISYRTIHFS 368
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 381 ISLATAPFVPFFTPLCNLYPFLYVLVFYS 295
IS T F P FT L +LYP Y + +S
Sbjct: 380 ISYRTIHFSPLFTYLIHLYPISYRTIHFS 408
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -1
Query: 381 ISLATAPFVPFFTPLCNLYPFLYVLVFYS 295
IS T F P FT NLYP Y + +S
Sbjct: 260 ISYRTIHFSPLFTYRINLYPISYRTIHFS 288
>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2992
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 7 GAPASVIYINLLMNYSPGLLFLIN*TPANYPIA 105
GAP++ I++ +M P L+N P N P+A
Sbjct: 1152 GAPSTPIFVPQMMEQGPNKSQLVNVLPVNRPVA 1184
>SB_42688| Best HMM Match : PB1 (HMM E-Value=0.12)
Length = 1338
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 407 LSFREEDSSFLLQQHRLFHSSRHYVIYIHF 318
LS R+ +L Q+ RLF S ++I++HF
Sbjct: 562 LSVRQAVHEYLQQERRLFLSKSKFLIHVHF 591
>SB_48675| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1329
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 142 MINKLKFQCPLTEVPNYNTSTFPEIKKYL 228
++++LK C E + +TFPE+KK L
Sbjct: 449 IVDQLKLNCRFDEPGSKKGATFPEVKKIL 477
>SB_24696| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00023)
Length = 547
Score = 27.9 bits (59), Expect = 4.4
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +2
Query: 323 GYKLHNGVKNGTNGAVAREMMNLPHETIEGLRSCKW-PGRYQVMDAGY 463
G H GV G NGA N+ H G R+ W GR M++GY
Sbjct: 298 GGNYHGGVGAGWNGAGCNRTQNM-HGEAGGARAQGWVGGRAGNMNSGY 344
>SB_3416| Best HMM Match : AWPM-19 (HMM E-Value=2.9)
Length = 311
Score = 27.5 bits (58), Expect = 5.8
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +1
Query: 106 QYDNYS*DR*LYMINKLKFQCPLTEVPN--YNTSTFPEIKKYLPVNLEAYQTNASLAVQL 279
QYD S + + INKLK VPN Y T T+ + +KY P+ QTN
Sbjct: 50 QYDAAS-TKDIASINKLKIWLA-ANVPNEDYQTGTYTKPQKYGPLCQNDTQTNVLENTMF 107
Query: 280 AHAW 291
H +
Sbjct: 108 RHPY 111
>SB_34538| Best HMM Match : NMN_transporter (HMM E-Value=5.8)
Length = 198
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 345 TPLCNLYPFLYVLVFYSHPSVRQLYREGRVCLICF*IYW 229
TP LYP VL+F + PSV + R+ + +YW
Sbjct: 21 TPANTLYPATLVLIFQTFPSVFMVIAYIRIFYV---VYW 56
>SB_27463| Best HMM Match : C_tripleX (HMM E-Value=0.11)
Length = 123
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 139 YMINKLKFQCPLTEVPNYNTSTFPEIKKY 225
+ + K C L PNY FPE+ +Y
Sbjct: 13 FCLPSCKRSCCLPNAPNYTPGQFPELMQY 41
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,028,402
Number of Sequences: 59808
Number of extensions: 271264
Number of successful extensions: 712
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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