Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K09
         (465 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006769-15|AAF60587.1|  337|Caenorhabditis elegans Serpentine r...    31   0.54 
U64848-13|AAY86245.1|  339|Caenorhabditis elegans Hypothetical p...    29   2.2  
U23172-6|AAV58869.1|  484|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U23172-5|AAC46527.1|  510|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U23172-4|AAL02494.1|  521|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U80454-4|AAB37876.3|  896|Caenorhabditis elegans Prion-like-(q/n...    28   3.8  
Z83319-1|CAB05908.1|  322|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z71185-4|CAA94909.2|  483|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>AC006769-15|AAF60587.1|  337|Caenorhabditis elegans Serpentine
           receptor, class j protein19 protein.
          Length = 337

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = -2

Query: 359 LFHSSRHYVIYIHFYMSLFFIRIQACASCTARDAFV*YASKFTGKYFFISGNVDVL 192
           L HSS+H +   + Y+S FF     CAS  A D  +  A  F  +Y F++  VD +
Sbjct: 28  LIHSSKHVLFGNYRYLSYFFAIFNLCAS--AADLLIPVA-VFYYRYTFVTLVVDAM 80


>U64848-13|AAY86245.1|  339|Caenorhabditis elegans Hypothetical
           protein C50E3.15 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 305 TRTYKNGYKLHNGVKNGTNGAVAREMMNLP 394
           T  YK+GYK + G  NG  G    +M  LP
Sbjct: 277 TLHYKSGYKWNTGEPNGLGGEYCLQMYILP 306


>U23172-6|AAV58869.1|  484|Caenorhabditis elegans Hypothetical
           protein F25B5.6c protein.
          Length = 484

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 386 NLPHETIEGLRSCKWPGRYQVM 451
           N+P    + + SC+WPGR Q++
Sbjct: 299 NVPLWMCDAIESCRWPGRSQIV 320


>U23172-5|AAC46527.1|  510|Caenorhabditis elegans Hypothetical
           protein F25B5.6a protein.
          Length = 510

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 386 NLPHETIEGLRSCKWPGRYQVM 451
           N+P    + + SC+WPGR Q++
Sbjct: 325 NVPLWMCDAIESCRWPGRSQIV 346


>U23172-4|AAL02494.1|  521|Caenorhabditis elegans Hypothetical
           protein F25B5.6b protein.
          Length = 521

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 386 NLPHETIEGLRSCKWPGRYQVM 451
           N+P    + + SC+WPGR Q++
Sbjct: 336 NVPLWMCDAIESCRWPGRSQIV 357


>U80454-4|AAB37876.3|  896|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 66
           protein.
          Length = 896

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = -3

Query: 331 FISIFICPCFLFASKRAPVVPRGT---RLSDMLLNLLVNISLFQGMWMCCNLVLQSVD 167
           FI IF    F+ A     +  + T   R +       +N++L Q  W+CCNL   +V+
Sbjct: 443 FILIFCTFWFVLAVTHVSLSKKNTKNNRRTVFTTKDTLNMNLRQSKWICCNLTKSTVN 500


>Z83319-1|CAB05908.1|  322|Caenorhabditis elegans Hypothetical
           protein T02D1.3 protein.
          Length = 322

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 369 TAPFVPFFTPLCNLYPFLYVLVFYSHPSVRQL 274
           T PF+  F PL  L P ++V++F     +R+L
Sbjct: 24  TFPFLVAFIPLIYLIPTVFVIMFILKVFIRRL 55


>Z71185-4|CAA94909.2|  483|Caenorhabditis elegans Hypothetical
           protein C35A5.7 protein.
          Length = 483

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = -1

Query: 339 LCNLYPFLYVLVFYSHPSVRQLYREGRVCLICF*IYW*IFLYFRECGCVVIWYFSQW 169
           LC++     VLVF +H     L+   R     + IYW  FLY+     V+    S W
Sbjct: 67  LCDILVMTSVLVFVTH---FLLFAGYRCDPTDYNIYWAYFLYYHSQATVIFHATSIW 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,541,505
Number of Sequences: 27780
Number of extensions: 211648
Number of successful extensions: 506
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)