Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K09
         (465 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   2.8  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   3.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.7  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.6  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = -2

Query: 359 LFHSSRHYVIYIHFYMSLFFIRIQACASCTARDAFV*YASKFTGKYFF 216
           +F SS    +Y  F++ +  I +         +A V      TG+Y F
Sbjct: 1   MFFSSGKQQVYQLFFIQIVLIIVMGALMTYGPEANVNLLKNRTGRYMF 48


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 427 FARPQAFYRFVRKIHHFSCNSTVCSILHAIM*FISIFI 314
           F+R   F+RF R+I H    +   S L  ++ + S ++
Sbjct: 186 FSRLVVFFRFERQIGHHLIQTFAPSTLVVMLSWFSFWL 223


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 310  PCFLFASKRAPVVPRGTRLSDMLLNLL 230
            PC L AS  APVV      S  +L +L
Sbjct: 1105 PCVLRASTPAPVVLEAVHASRRVLIVL 1131


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 142 MINKLKFQCPLTEVPNYNTSTFPEIKKYLPVNLE 243
           M   + +   L  V  +++ T+  IKK   VN+E
Sbjct: 1   MYGFVNYALELLVVKTFDSETWEAIKKDAAVNME 34


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 142 MINKLKFQCPLTEVPNYNTSTFPEIKKYLPVNLE 243
           M   + +   L  V  +++ T+  IKK   VN+E
Sbjct: 1   MYGFVNYALELLVVKTFDSETWEAIKKDAAVNME 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,309
Number of Sequences: 438
Number of extensions: 2979
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)