Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K09
         (465 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62030.1 68414.m06996 DC1 domain-containing protein contains ...    37   0.006
At4g15070.1 68417.m02315 DC1 domain-containing protein contains ...    32   0.22 
At5g13250.1 68418.m01522 hypothetical protein                          28   2.7  
At1g66440.1 68414.m07548 DC1 domain-containing protein contains ...    28   3.6  
At2g28460.1 68415.m03457 DC1 domain-containing protein contains ...    27   6.2  
At2g11090.1 68415.m01187 expressed protein                             27   6.2  
At1g43760.1 68414.m05034 hypothetical protein                          27   8.3  

>At1g62030.1 68414.m06996 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 743

 Score = 37.1 bits (82), Expect = 0.006
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = -3

Query: 379 FSCNSTVCSILHAIM*FISIFICP-CFLFASKRAPVVPRGTRLSDMLLNLLVNISLFQGM 203
           F+C+  +CS+ H    F   +ICP C   A +R   +PR  R+S     +  N S  QG 
Sbjct: 296 FACS--LCSLTHTSCPF---YICPPCDFVAHQRCISLPRVIRISRHPHRISFNHSFGQGD 350

Query: 202 WMCCNLVLQSVDTEI*AY 149
           W CC +  + +D +   Y
Sbjct: 351 WSCC-VCRRKIDNDYGGY 367


>At4g15070.1 68417.m02315 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 889

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
 Frame = -3

Query: 403 RFVRKIHHFSCNSTVCSILHAIM*FISIFICP-CFLFASKRAPVVPRGTRLSDMLLNLLV 227
           +F RK    +CN  VCS+ ++   F   +ICP C     ++   +PR  R+S     +  
Sbjct: 518 QFPRKTS-VTCN--VCSLAYSSCPF---YICPPCDFVVHQKCLSLPRVIRISRHFHRIYF 571

Query: 226 NISLFQGMWMCCNLVLQSVDTEI*AY 149
            +S  QG+  CC +  + +D +   Y
Sbjct: 572 TLSFDQGV-RCCGVCRRKIDNDYGGY 596


>At5g13250.1 68418.m01522 hypothetical protein 
          Length = 286

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 445 LISPRPFARPQAFYRFVRKIHHFSCNS 365
           L+ P  FA   AF R ++K HHFS  S
Sbjct: 14  LLLPCAFANSFAFMRLLQKTHHFSAVS 40


>At1g66440.1 68414.m07548 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 726

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = -3

Query: 376 SCNSTVCSILHAIM*FISIFIC-PCFLFASKRAPVVPRGTRLSDMLLNLLVNISLFQGMW 200
           +CN  VC++ H    F   +IC PC     +    +PR  R+S  L  +    S  QG W
Sbjct: 305 TCN--VCALDHFNCPF---YICSPCDFVVHQSCITLPRVIRISRHLHRISFTPSFEQGDW 359

Query: 199 MCCNLVLQSVDTEI*AY 149
             C +  + +D +   Y
Sbjct: 360 -SCGVCRKKIDNDCGGY 375


>At2g28460.1 68415.m03457 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 704

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
 Frame = -3

Query: 400 FVRKIHHFSCNSTVCSILHAIM*FISIFICP-CFLFASKRAPVVPRGTRLSDMLLNLLVN 224
           F+RK    +CN+  C + H+      +++CP C     K    +PR  R+S     +   
Sbjct: 276 FLRKTS-LTCNA--CGLSHSSC---PLYMCPPCDFVIHKSCISLPRLIRISRHFHRIAYT 329

Query: 223 ISLFQGMWMCCNLVLQSVDTEI*AYL 146
            S  +G W  C++  + +D +   Y+
Sbjct: 330 PSFDEGDW-SCSVCRKKIDNDYGGYV 354


>At2g11090.1 68415.m01187 expressed protein
          Length = 151

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -2

Query: 464 HTRRPLLDISPAICKTSSLLSFREEDSSFLLQQHRLFHSSR 342
           HTR P  + SP   +  +    R+EDSS  L  H L H  R
Sbjct: 100 HTRLPASESSPFCTQPDTRAEGRKEDSSLSL-DHSLDHLGR 139


>At1g43760.1 68414.m05034 hypothetical protein
          Length = 626

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 451 HYLISPRPFARPQAFYRFVRKIHHFSCNSTVCSILHAI 338
           H L S      P +  R ++ IH F CN T+ S L A+
Sbjct: 494 HLLGSDSDILTPDSVQR-IKDIHPFRCNDTLASRLSAL 530


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,685,888
Number of Sequences: 28952
Number of extensions: 186105
Number of successful extensions: 468
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)