Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K08
         (350 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   141   3e-35
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   141   3e-35
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    26   2.0  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    25   4.5  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    24   7.9  
SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|...    24   7.9  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    24   7.9  
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun...    24   7.9  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  141 bits (341), Expect = 3e-35
 Identities = 63/115 (54%), Positives = 86/115 (74%)
 Frame = +1

Query: 4   RGVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIEMXXXXXXXX 183
           R V+KV  S++LRAGKGK+RNRR VQR+GPL+++N+D G+ +AFRNIPG+E+        
Sbjct: 178 RDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIPGVEIVNVRRLNL 237

Query: 184 XXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSKEKKNFNLPQPKMANTDLSRL 348
              APGGHLGRF+IWTKSAF  LD +FGS    ++ KKN+ LP+  ++N D++RL
Sbjct: 238 LQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFLPENIISNADVTRL 292


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  141 bits (341), Expect = 3e-35
 Identities = 63/115 (54%), Positives = 86/115 (74%)
 Frame = +1

Query: 4   RGVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIEMXXXXXXXX 183
           R V+KV  S++LRAGKGK+RNRR VQR+GPL+++N+D G+ +AFRNIPG+E+        
Sbjct: 178 RDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIPGVEIVNVRRLNL 237

Query: 184 XXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSKEKKNFNLPQPKMANTDLSRL 348
              APGGHLGRF+IWTKSAF  LD +FGS    ++ KKN+ LP+  ++N D++RL
Sbjct: 238 LQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFLPENIISNADVTRL 292


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -3

Query: 222 DEPAEMAAGCQLQEVQLVHVEHLDARDVAECTSQTLVLIIDDKGSFA 82
           +E A +AA     EVQ+VH E    R  A    ++ VL  ++K + A
Sbjct: 513 NEGALIAARSNSNEVQMVHFEQAIERVTAGLEKKSRVLSPEEKNTVA 559


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 94  LIIYNKDKGLTRAFRNIP 147
           +++++K KG+T  FRN P
Sbjct: 134 VLVFSKQKGITVVFRNDP 151


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 70  RRVQRKGPLIIYNKDKGLTRAFRN 141
           R+ ++KG  ++ +KDKGL    R+
Sbjct: 545 RKSRKKGTALVLDKDKGLAVTSRS 568


>SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 303

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
 Frame = +1

Query: 205 HLGRFIIWTKSAFDRLDP--------LFGSWKTPSKEKKNFNLPQPKMA 327
           ++ R + W+KSA  + D         +F  WK P+  +K+F L   K A
Sbjct: 102 YVKRLLEWSKSAGPQGDKDVHFAVATMFVKWKEPASAEKHFVLGNEKSA 150


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 253  DPLFGSWKTPSKEKKNFNLPQPKMANTDLSRL 348
            +PLF + KT S ++    L +PK  N  L RL
Sbjct: 971  EPLFVTVKTASTDESRSVLIKPKADNVILFRL 1002


>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
           Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 251

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = -3

Query: 261 QRVKPIESGLGPDDEP-AEMAAGCQ---LQEVQLVHVEHL 154
           Q  +PI   +GP+ EP AE  +G +   LQE     VE L
Sbjct: 173 QHFRPIGDAVGPESEPEAEPKSGIKEHILQETGDATVEEL 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,193,721
Number of Sequences: 5004
Number of extensions: 20664
Number of successful extensions: 69
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)