Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_K08
(350 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 132 7e-32
07_01_0578 + 4295386-4296489,4297394-4297507 128 9e-31
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 31 0.25
03_02_0377 - 7898075-7898605,7900782-7901000,7901079-7901142,790... 27 3.1
12_01_1072 - 11106298-11106660,11109176-11109463,11109537-11110403 27 4.1
07_01_0866 - 7195305-7195756,7197171-7197447 27 4.1
05_02_0130 - 6906540-6907522,6908542-6908737 27 4.1
05_02_0129 - 6897189-6897448,6897581-6898063,6898409-6898604 27 4.1
05_02_0128 - 6890918-6891900,6892929-6893124 27 4.1
03_05_0051 - 20288456-20291728 27 5.5
12_02_0056 + 12955832-12956410,12957398-12957499 26 7.2
10_08_0132 + 15087274-15087797,15089544-15089732,15090048-150901... 26 7.2
12_01_0018 + 132654-133304,133726-134265,134357-134436,134673-13... 26 9.6
02_03_0161 + 15828887-15828985,15829066-15829686,15829759-158299... 26 9.6
01_06_0792 - 32031569-32033041,32033124-32033341,32033502-32033568 26 9.6
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 132 bits (319), Expect = 7e-32
Identities = 60/112 (53%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
Frame = +1
Query: 16 KVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKG-LTRAFRNIPGIEMXXXXXXXXXXX 192
K S +RAGKGKMRNRR + RKGPLI+Y + + +AFRN+PG+++
Sbjct: 185 KTKDSVAIRAGKGKMRNRRYINRKGPLIVYGTEGSKVVKAFRNLPGVDVANVERLNLLDL 244
Query: 193 APGGHLGRFIIWTKSAFDRLDPLFGSWKTPSKEKKNFNLPQPKMANTDLSRL 348
APGGHLGRF+IWT+ AF +LD ++G + TP+ +KK F LP+PKMAN DLSRL
Sbjct: 245 APGGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKGFVLPRPKMANADLSRL 296
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 128 bits (310), Expect = 9e-31
Identities = 57/112 (50%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
Frame = +1
Query: 16 KVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKG-LTRAFRNIPGIEMXXXXXXXXXXX 192
K S +R GKGKMRNRR + RKGPLI+Y + + +AFRN+PG+++
Sbjct: 186 KAKDSVGIRPGKGKMRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGVDVANVERLNLLDL 245
Query: 193 APGGHLGRFIIWTKSAFDRLDPLFGSWKTPSKEKKNFNLPQPKMANTDLSRL 348
APGGHLGRF+IWT+SAF +L+ ++G+++ PS +KK F LP+PKMAN DL R+
Sbjct: 246 APGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGFILPRPKMANADLGRI 297
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 31.1 bits (67), Expect = 0.25
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +1
Query: 193 APG--GHLGRFIIWTKSAFDRLDPLFGSWKTPSKEKKNFNLPQPKMANT 333
APG G GR+++ SA + LDP F SW S+E K F++ + A++
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717
>03_02_0377 -
7898075-7898605,7900782-7901000,7901079-7901142,
7901226-7901282,7901373-7901471,7901744-7901793,
7902378-7902422,7902967-7903062
Length = 386
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 258 AVRLVEDTIEGEEELQPAPAEDGQHRP 338
A+ +D +EG EE P P E + RP
Sbjct: 336 AIDEADDAVEGTEEGDPVPGETVEERP 362
>12_01_1072 - 11106298-11106660,11109176-11109463,11109537-11110403
Length = 505
Score = 27.1 bits (57), Expect = 4.1
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +3
Query: 171 QAEPPEAGT-RRPSRQVHHLDQVRFR*A*PAVRLVEDTIEGEEELQPAPAEDGQHRPQPS 347
+A EAGT ++ R V QVR R + A + D E EE+ + EDG H PS
Sbjct: 38 RAGDDEAGTSKKRKRAVAKGGQVRTRRSAKAA-VESDGEEEEEDAEAGSEEDGSHGYTPS 96
>07_01_0866 - 7195305-7195756,7197171-7197447
Length = 242
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 124 SDPCPYYR**GVLCVGHDDD 65
+DP P R VLC+G+DDD
Sbjct: 92 ADPAPATRREVVLCIGYDDD 111
>05_02_0130 - 6906540-6907522,6908542-6908737
Length = 392
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 255 PAVRLVEDTIEGEEELQPAPAEDGQH 332
P R + D IEGE +LQPA +H
Sbjct: 309 PGGRAILDNIEGELQLQPAKLAASRH 334
>05_02_0129 - 6897189-6897448,6897581-6898063,6898409-6898604
Length = 312
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 255 PAVRLVEDTIEGEEELQPAPAEDGQH 332
P R + D IEGE +LQPA +H
Sbjct: 229 PGGRAILDNIEGELQLQPAKLAASRH 254
>05_02_0128 - 6890918-6891900,6892929-6893124
Length = 392
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 255 PAVRLVEDTIEGEEELQPAPAEDGQH 332
P R + D IEGE +LQPA +H
Sbjct: 309 PGGRAILDNIEGELQLQPAKLAASRH 334
>03_05_0051 - 20288456-20291728
Length = 1090
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 195 CQLQEVQLVHVEHLDARDVAECTSQT 118
C L +L H+E+LD +D +E T+ T
Sbjct: 964 CPLLRERLEHIENLDIQDCSEITTFT 989
>12_02_0056 + 12955832-12956410,12957398-12957499
Length = 226
Score = 26.2 bits (55), Expect = 7.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 156 DAQREQAEPPEAGTRRPSRQVHHLDQ 233
DA Q PPE +RRP R+ LD+
Sbjct: 175 DADLYQVPPPEFVSRRPRRKGSQLDE 200
>10_08_0132 +
15087274-15087797,15089544-15089732,15090048-15090186,
15090454-15090594,15091420-15091569,15091908-15092011,
15092258-15092432,15092714-15092823,15092906-15093073,
15093180-15093345,15093771-15094049,15094445-15094543,
15094619-15094676,15095145-15095336,15095693-15095724,
15096023-15096117,15096321-15096426
Length = 908
Score = 26.2 bits (55), Expect = 7.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 216 PAEMAAGCQLQEVQLVHVEHLDARDVAECTSQTL 115
P E+ GC L +QL H++ +A V C Q +
Sbjct: 636 PCEVKTGCTLSPIQLKHIQ-ANAGHVPLCIHQDM 668
>12_01_0018 +
132654-133304,133726-134265,134357-134436,134673-134949
Length = 515
Score = 25.8 bits (54), Expect = 9.6
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -3
Query: 228 PDDEPAEMAAGCQLQEVQLVHVEHLDARDVAEC 130
P +EP++ + ++ L EH D RD C
Sbjct: 47 PPEEPSDASCALEIHAADLARAEH-DRRDAQAC 78
>02_03_0161 +
15828887-15828985,15829066-15829686,15829759-15829908,
15829994-15830389,15830455-15830487,15830553-15830693,
15830793-15830924,15830999-15831082,15831159-15831461,
15831543-15831734,15831805-15831942,15832019-15832143,
15832223-15832319
Length = 836
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 272 HEPNSGSSLSKADLVQMMNLPRWPPGASFRRFSLFTL 162
++ + G ++S +L + +N + P RRF LFT+
Sbjct: 143 YKQHKGKNISLHELARQINSAKHPDEHFLRRFVLFTI 179
>01_06_0792 - 32031569-32033041,32033124-32033341,32033502-32033568
Length = 585
Score = 25.8 bits (54), Expect = 9.6
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -1
Query: 200 PGASFRRFSLFTLSISMPGMLRNARVRPLSLL 105
P ASF FS+ TL++ + + A VRPLS L
Sbjct: 362 PAASFGVFSILTLTVWV-AVYDRALVRPLSRL 392
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,553,764
Number of Sequences: 37544
Number of extensions: 168057
Number of successful extensions: 544
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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