Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K08
         (350 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)                90   4e-19
SB_57249| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)                   28   1.9  
SB_26480| Best HMM Match : EGF (HMM E-Value=0)                         28   2.4  
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)              27   5.7  
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.5  
SB_17878| Best HMM Match : Drf_FH1 (HMM E-Value=0.022)                 26   9.9  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score = 90.2 bits (214), Expect = 4e-19
 Identities = 41/69 (59%), Positives = 49/69 (71%)
 Frame = +1

Query: 10  VLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIEMXXXXXXXXXX 189
           V K   S+++RAGKGKMRNRR V RKGPLIIYN D+GL +AFRN+PG+E+          
Sbjct: 177 VEKCIDSKKIRAGKGKMRNRRTVMRKGPLIIYNNDQGLRQAFRNLPGVELQHVDRLNLLK 236

Query: 190 XAPGGHLGR 216
             PGGHLGR
Sbjct: 237 LCPGGHLGR 245


>SB_57249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 503

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -1

Query: 302 KFFFSFDGVFHEPNSGS-SLSKADLV 228
           K+F +F+G FH  N G+  +SK DLV
Sbjct: 49  KYFLTFEGSFHLSNEGAEEVSKDDLV 74


>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
          Length = 1790

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 276 LPRAEQRVKPIESGLGPDDEPAEMAAGCQLQEVQLVHVEHLD 151
           LP    +V P+ES L   D P + +   +LQ   +V + HLD
Sbjct: 407 LPSGAPQVSPVESFLRYLDLPEDESEFVELQYAAVVLISHLD 448


>SB_26480| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1772

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 293 FSFDGVFHEPNSGSSLSKADLVQMMNLPRWPPG 195
           F F+G  +EP+    L K+  +Q+M LP  PPG
Sbjct: 529 FFFNGDCNEPDVQQQL-KSSFLQLMGLPFIPPG 560


>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1212

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = +3

Query: 114 QGSDSCIPQHPWHRDAQREQAEPPE--AGTRRPSRQVHHLDQVRFR*A*PAVRLVEDTIE 287
           Q  ++C  + P  R AQ ++  PP   A  +RP+  +H  D      A P V   ED IE
Sbjct: 770 QLKEACKSRPP--RPAQPKRVPPPRPTARPKRPNTSIHSQDDGLVGSA-PQVNPSEDVIE 826

Query: 288 GEEELQPAPAEDGQHRPQP 344
             + L P  A   +  P P
Sbjct: 827 DFDPL-PQKAPKPRRPPPP 844


>SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)
          Length = 2489

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -1

Query: 260 SGSSLSKADLVQMMNLPRWPPGASFRRFSLFTLSISMPGMLRN 132
           SG  LS     ++  L R+  G S   F     SIS PG+L N
Sbjct: 326 SGVKLSDVSPYRLNRLDRFSSGLSNNPFPAIDKSISSPGVLVN 368


>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2388

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +1

Query: 31   QRLRAGKGKMRNR--RRVQRKGPLIIYNKDKG 120
            Q+L A KGK ++R  R +QR+  L + N+D G
Sbjct: 1147 QKLDASKGKQQSRENRAMQRRLQLAVCNEDFG 1178


>SB_17878| Best HMM Match : Drf_FH1 (HMM E-Value=0.022)
          Length = 664

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 37  LRAGKGKMRNRRRVQRKGPLIIYNKDKGL 123
           LRAG  +M N   + R GP +  N  +G+
Sbjct: 567 LRAGVKEMENSSEINRVGPAVEQNTCRGI 595


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,504,575
Number of Sequences: 59808
Number of extensions: 175506
Number of successful extensions: 456
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)