Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K08
         (350 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   123   4e-29
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   0.94 
AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin...    27   2.9  
Z69637-7|CAO78728.1|  433|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z69637-1|CAA93467.1|  601|Caenorhabditis elegans Hypothetical pr...    27   3.8  
AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian el...    26   6.6  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical pr...    26   8.7  
U49830-7|AAM98046.1|  774|Caenorhabditis elegans Neuronal igcam ...    26   8.7  
U49830-6|AAK31481.1|  964|Caenorhabditis elegans Neuronal igcam ...    26   8.7  
U49830-5|AAK31482.1| 1227|Caenorhabditis elegans Neuronal igcam ...    26   8.7  
U49830-4|AAU20850.1| 1196|Caenorhabditis elegans Neuronal igcam ...    26   8.7  
M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger pro...    26   8.7  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  123 bits (296), Expect = 4e-29
 Identities = 57/112 (50%), Positives = 78/112 (69%), Gaps = 1/112 (0%)
 Frame = +1

Query: 16  KVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIEMXXXXXXXXXXXA 195
           KVY S+R RAGKGK+RNR+  Q+ GP++IY +D    RAFRNIPG+++           A
Sbjct: 181 KVYNSKRNRAGKGKLRNRQHKQKLGPVVIYGQDAECARAFRNIPGVDVMNVERLNLLKLA 240

Query: 196 PGGHLGRFIIWTKSAFDRLDPLFGSWKTPSKE-KKNFNLPQPKMANTDLSRL 348
           PGGHLGR IIWT+SAF +LD ++G+    S + KK +++P P MAN+D SR+
Sbjct: 241 PGGHLGRLIIWTESAFKKLDTIYGTTVANSSQLKKGWSVPLPIMANSDFSRI 292


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 144 PWHRDAQREQAEPPEAGTRRPSRQ 215
           PW+        EPP  G+RRPS+Q
Sbjct: 802 PWYSRDPIVNPEPPSVGSRRPSKQ 825


>AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin
            related protein 2 protein.
          Length = 1335

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = -1

Query: 311  GRLKFFFSFDGVFHEPNSGSSLSKADLVQMMNLPRWPPGASFRRFSLFTLSISMPGMLRN 132
            G++ FF +         +   L+K+     +++P  P G SFR   ++  S S+  ML  
Sbjct: 1268 GKINFFQTSQSFLGMGQAQLKLTKSQPAPTVSVPTTPSGTSFRPRLVWINSKSLTLMLPE 1327

Query: 131  ARVRPLSL 108
             R +  SL
Sbjct: 1328 GREQRFSL 1335


>Z69637-7|CAO78728.1|  433|Caenorhabditis elegans Hypothetical
           protein F35G2.1b protein.
          Length = 433

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 251 SLSKADLVQMMNLPRWPPGASFRR 180
           +LS + LVQM+N+  +P  A FRR
Sbjct: 66  ALSNSPLVQMLNIRNFPTVALFRR 89


>Z69637-1|CAA93467.1|  601|Caenorhabditis elegans Hypothetical
           protein F35G2.1a protein.
          Length = 601

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 251 SLSKADLVQMMNLPRWPPGASFRR 180
           +LS + LVQM+N+  +P  A FRR
Sbjct: 234 ALSNSPLVQMLNIRNFPTVALFRR 257


>AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian
           elks/cast/erc/rab6 interactingprotein homolog protein 1
           protein.
          Length = 836

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 162 QREQAEPPEAGTRRPSRQVHHLDQVR 239
           ++E  E  E G R   R   H+DQVR
Sbjct: 486 EKEMTEKIEQGERERQRLAEHIDQVR 511


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
           protein W01F3.3 protein.
          Length = 2175

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 261 VRLVEDTIEGEEELQPAPAEDGQHRP 338
           V+ VED  E EEE+     EDG+  P
Sbjct: 682 VKTVEDEEEEEEEVVEEEQEDGKEEP 707


>Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical
           protein C25D7.3 protein.
          Length = 2150

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 153 RDAQREQAEPPEAGTRRPSRQVHH 224
           RD  RE+ + PE    +P   VHH
Sbjct: 175 RDVVREELKDPETSFSKPPSVVHH 198


>U49830-7|AAM98046.1|  774|Caenorhabditis elegans Neuronal igcam
           protein 6, isoform c protein.
          Length = 774

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 257 GSSLSKADLVQMMNLPRWPPGASFRR-FSLFTLSISMP 147
           GSS S A L    + P +PP A  R+ F+ F  ++S+P
Sbjct: 102 GSSSSSALLTVKDSAPVFPPNAMSRKVFAAFGSTVSIP 139


>U49830-6|AAK31481.1|  964|Caenorhabditis elegans Neuronal igcam
           protein 6, isoform a protein.
          Length = 964

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 257 GSSLSKADLVQMMNLPRWPPGASFRR-FSLFTLSISMP 147
           GSS S A L    + P +PP A  R+ F+ F  ++S+P
Sbjct: 292 GSSSSSALLTVKDSAPVFPPNAMSRKVFAAFGSTVSIP 329


>U49830-5|AAK31482.1| 1227|Caenorhabditis elegans Neuronal igcam
           protein 6, isoform b protein.
          Length = 1227

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 257 GSSLSKADLVQMMNLPRWPPGASFRR-FSLFTLSISMP 147
           GSS S A L    + P +PP A  R+ F+ F  ++S+P
Sbjct: 555 GSSSSSALLTVKDSAPVFPPNAMSRKVFAAFGSTVSIP 592


>U49830-4|AAU20850.1| 1196|Caenorhabditis elegans Neuronal igcam
           protein 6, isoform d protein.
          Length = 1196

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 257 GSSLSKADLVQMMNLPRWPPGASFRR-FSLFTLSISMP 147
           GSS S A L    + P +PP A  R+ F+ F  ++S+P
Sbjct: 524 GSSSSSALLTVKDSAPVFPPNAMSRKVFAAFGSTVSIP 561


>M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger
           protein protein.
          Length = 2150

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 153 RDAQREQAEPPEAGTRRPSRQVHH 224
           RD  RE+ + PE    +P   VHH
Sbjct: 175 RDVVREELKDPETSFSKPPSVVHH 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,863,307
Number of Sequences: 27780
Number of extensions: 129222
Number of successful extensions: 440
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)