Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K08
         (350 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...   128   8e-31
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...   127   2e-30
At5g17910.1 68418.m02100 expressed protein                             29   0.66 
At1g41900.1 68414.m04840 myosin heavy chain-related similar to M...    27   2.7  
At1g75400.1 68414.m08759 expressed protein                             27   3.5  
At1g13100.1 68414.m01519 cytochrome P450 71B29, putative (CYP71B...    26   8.1  

>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score =  128 bits (310), Expect = 8e-31
 Identities = 56/112 (50%), Positives = 80/112 (71%), Gaps = 1/112 (0%)
 Frame = +1

Query: 16  KVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKG-LTRAFRNIPGIEMXXXXXXXXXXX 192
           K   S  +R GKGKMRNRR + RKGPL++Y  +   + +AFRN+PG+E+           
Sbjct: 187 KAKNSIGIRPGKGKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLPGVELCHVERLNLLKL 246

Query: 193 APGGHLGRFIIWTKSAFDRLDPLFGSWKTPSKEKKNFNLPQPKMANTDLSRL 348
           APGGHLGRF+IWTKSAF++L+ ++GS++ PS++KK + LP+ KM N DL+R+
Sbjct: 247 APGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARI 298


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score =  127 bits (306), Expect = 2e-30
 Identities = 55/112 (49%), Positives = 80/112 (71%), Gaps = 1/112 (0%)
 Frame = +1

Query: 16  KVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKG-LTRAFRNIPGIEMXXXXXXXXXXX 192
           K   S  +R GKGKMRNRR + RKGPL+++  +   + +AFRN+PG+E+           
Sbjct: 188 KAKNSIGIRPGKGKMRNRRYISRKGPLVVFGTEGAKIVKAFRNLPGVELCHVERLNLLKL 247

Query: 193 APGGHLGRFIIWTKSAFDRLDPLFGSWKTPSKEKKNFNLPQPKMANTDLSRL 348
           APGGHLGRF+IWTKSAF++L+ ++GS++ PS++KK + LP+ KM N DL+R+
Sbjct: 248 APGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARI 299


>At5g17910.1 68418.m02100 expressed protein
          Length = 1342

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -1

Query: 272 HEPNSGSSLSKADLVQMMNLPRWPPGASFRRFSLFTLSISMPGMLRNARVRPLSLL 105
           +EPN      K D  Q     + P    FRR   F++  SM G  R+ R+RP  +L
Sbjct: 454 YEPNEEKPDLKGDGFQEEFSSQQPKDPMFRRHESFSVGPSMLGGPRHDRLRPFFVL 509


>At1g41900.1 68414.m04840 myosin heavy chain-related similar to
           Myosin heavy chain, skeletal muscle, extraocular
           (MyHC-eo) (SP:Q9UKX3)  {Homo sapiens}
          Length = 442

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 37  LRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIE 156
           L+ G  K R+R  VQ +G + +Y+K  G    FR+   ++
Sbjct: 364 LQTGLRKRRSRGAVQVEGGIRLYSKQVGSPAGFRDFGDVD 403


>At1g75400.1 68414.m08759 expressed protein
          Length = 455

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = -1

Query: 266 PNSGSSLSKADLVQMMNL 213
           P+SGSSL+ +DL+++ NL
Sbjct: 110 PSSGSSLASSDLIEVKNL 127


>At1g13100.1 68414.m01519 cytochrome P450 71B29, putative (CYP71B29)
           strong similarity to gb|X97864 cytochrome P450 and
           identical to Cytochrome P450 71B29
           (SP:Q9SAE4)[Arabidopsis thaliana];PF|00067 Cytochrome
           P450 family
          Length = 490

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 196 PGGHLGRFIIWTKSAFDRLDPLFGSWKTPSKEKKNFNL-PQPKMANT 333
           PGG +GRFI W      R D +F    T  +   +++L P  K+A++
Sbjct: 217 PGG-IGRFIDWISGQNKRFDNVFSDLDTFFQNILDYHLKPGRKVADS 262


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,511,091
Number of Sequences: 28952
Number of extensions: 121665
Number of successful extensions: 331
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)