Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K06
         (362 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   2.2  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    21   3.9  
DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    20   9.0  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 204 HRERRNPRSAVKKRSNAGVRLQCVTLRALATVRRK 308
           +  R+     +KK  + G+R +CV       V+RK
Sbjct: 235 YMRRKCQECRLKKCLSVGMRPECVVPEVQCAVKRK 269


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 9   CVAML*NAFYLPKRARKMQN 68
           CV  + + FYL KRA  + N
Sbjct: 199 CVTYVFDLFYLSKRASDLCN 218


>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 19.8 bits (39), Expect = 9.0
 Identities = 6/19 (31%), Positives = 10/19 (52%)
 Frame = +1

Query: 22  CKTPFTCQRGQGKCKTQIQ 78
           C       + +G CK+Q+Q
Sbjct: 50  CNGEVAVNKCEGSCKSQVQ 68


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,102
Number of Sequences: 336
Number of extensions: 1076
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7404950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)