Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K06
         (362 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...    54   7e-09
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...    53   2e-08
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    24   8.3  
SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces ...    24   8.3  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    24   8.3  

>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 54.0 bits (124), Expect = 7e-09
 Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
 Frame = +2

Query: 5   EVRRYVVKR-LLPAKEGKENAKPRYNAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSAE 181
           +VR++V++R ++P KEGK   KP   APKIQRLVTP  LQ                    
Sbjct: 152 DVRQFVIRREVVPKKEGK---KPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEA 208

Query: 182 ADYAKLLAQRKKESKVRRQ 238
           A++A+L+A+R  E+K +R+
Sbjct: 209 AEFAQLMAKRVAEAKQKRE 227


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 52.8 bits (121), Expect = 2e-08
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
 Frame = +2

Query: 5   EVRRYVVKR-LLPAKEGKENAKPRYNAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSAE 181
           +VR++V++R ++P KEGK   KP   APKIQRLVTP  LQ                    
Sbjct: 152 DVRQFVIRREVVPKKEGK---KPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEA 208

Query: 182 ADYAKLLAQRKKESKVRRQ 238
           A++A+L+A+R  E+K +++
Sbjct: 209 AEFAQLMAKRVAEAKQKKE 227


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 41   AKEGKENAKPRYNAPKIQRL 100
            A++  +NAK R+NA K +RL
Sbjct: 1048 ARKAAKNAKERFNAVKQKRL 1067


>SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 179

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 5   EVRRYVVKRLLPAKEGKENAKPRYNAP 85
           E+   + K+LL  +EGKE  +   N P
Sbjct: 111 EIHERLGKQLLEKEEGKEKTREESNPP 137


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 204 HRERRNPRSAVKKRSNAGVRLQC 272
           H  +R+P  A++     GVRL C
Sbjct: 314 HEHQRDPAYAIRTALTRGVRLLC 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,074,797
Number of Sequences: 5004
Number of extensions: 15499
Number of successful extensions: 41
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)