Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K06
         (362 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...    56   6e-09
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...    56   6e-09
12_01_0424 - 3346402-3346875                                           27   3.4  

>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score = 56.4 bits (130), Expect = 6e-09
 Identities = 35/83 (42%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
 Frame = +2

Query: 5   EVRRYV--VKRLLPAKEGKENAKPRYNAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSA 178
           +VR+YV   +R    K GK+ +K    APKIQRLVTP+ LQ                 S 
Sbjct: 154 DVRKYVNTYRRTFTTKNGKKVSK----APKIQRLVTPLTLQRKRARIADKKKRIAKKKSE 209

Query: 179 EADYAKLLAQRKKESKVRRQEEI 247
            A+Y KLLAQR KE + RR E +
Sbjct: 210 AAEYQKLLAQRLKEQRERRSESL 232


>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score = 56.4 bits (130), Expect = 6e-09
 Identities = 35/83 (42%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
 Frame = +2

Query: 5   EVRRYV--VKRLLPAKEGKENAKPRYNAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSA 178
           +VR+YV   +R    K GK+ +K    APKIQRLVTP+ LQ                 S 
Sbjct: 154 DVRKYVNTYRRTFTTKNGKKVSK----APKIQRLVTPLTLQRKRARIAQKKQRIAKKKSE 209

Query: 179 EADYAKLLAQRKKESKVRRQEEI 247
            A+Y KLLAQR KE + RR E +
Sbjct: 210 AAEYQKLLAQRLKEQRERRSESL 232


>12_01_0424 - 3346402-3346875
          Length = 157

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -1

Query: 128 VCAAEQPVLLASGF*AHC--IWVLHFPCPLWQVKGVLQ 21
           VCA    V L +GF A+   + VL +P P+W  KG+L+
Sbjct: 98  VCAPNVVVGLPNGFGANGLEVEVLAWPNPVWAPKGLLE 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,201,207
Number of Sequences: 37544
Number of extensions: 109232
Number of successful extensions: 165
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)