Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K06
         (362 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)               73   5e-14
SB_46904| Best HMM Match : Pentaxin (HMM E-Value=0.13)                 30   0.65 
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)                 28   2.0  
SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21)                   28   2.6  
SB_59790| Best HMM Match : VWA (HMM E-Value=0)                         27   4.6  
SB_20664| Best HMM Match : DUF1113 (HMM E-Value=0.84)                  26   8.0  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score = 73.3 bits (172), Expect = 5e-14
 Identities = 40/81 (49%), Positives = 50/81 (61%)
 Frame = +2

Query: 5   EVRRYVVKRLLPAKEGKENAKPRYNAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSAEA 184
           +VR+YV++R LP KEGK   K +  APKIQRLVTPVVLQ                    A
Sbjct: 119 DVRQYVIRRPLPEKEGK---KAKSKAPKIQRLVTPVVLQRKRKRLALKRQRAQKCKQEAA 175

Query: 185 DYAKLLAQRKKESKVRRQEEI 247
           DYAKLLA+R KE+K +R E++
Sbjct: 176 DYAKLLAKRAKEAKEKRHEQL 196


>SB_46904| Best HMM Match : Pentaxin (HMM E-Value=0.13)
          Length = 323

 Score = 29.9 bits (64), Expect = 0.65
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -1

Query: 164 WPDVSS*GLDDDVCAAEQPVLLASGF*AHCIW 69
           WPDV +  ++ +V   E+P ++ +GF + C+W
Sbjct: 101 WPDVRN-NVNGNVQVKERPEIMLTGFSSKCLW 131


>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
          Length = 1421

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = +2

Query: 173  SAEADYAKLLAQRKKESKVRRQEEIK 250
            +AEA+  +L  Q+K+E K +R+EE++
Sbjct: 1173 AAEAERRRLEVQKKREEKKKREEEMR 1198


>SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21)
          Length = 759

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 22  CKTPFTCQRGQGKCKTQIQC 81
           C T   C+ G+G C T+I+C
Sbjct: 534 CVTSIRCRSGEGTCVTRIRC 553



 Score = 27.5 bits (58), Expect = 3.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 22  CKTPFTCQRGQGKCKTQIQC 81
           C T   C+ G+G C T I+C
Sbjct: 560 CVTSIRCRSGEGTCVTSIRC 579



 Score = 27.5 bits (58), Expect = 3.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 22  CKTPFTCQRGQGKCKTQIQC 81
           C T   C+ G+G C T I+C
Sbjct: 573 CVTSIRCRSGEGTCVTSIRC 592



 Score = 27.5 bits (58), Expect = 3.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 22  CKTPFTCQRGQGKCKTQIQC 81
           C T   C+ G+G C T I+C
Sbjct: 586 CVTSIRCRSGEGTCVTSIRC 605



 Score = 27.1 bits (57), Expect = 4.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 22  CKTPFTCQRGQGKCKTQIQC 81
           C T   C+ G+G C T I+C
Sbjct: 547 CVTRIRCRSGEGTCVTSIRC 566



 Score = 26.2 bits (55), Expect = 8.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 22  CKTPFTCQRGQGKCKTQIQC 81
           C T   C+ G G C T+I+C
Sbjct: 599 CVTSIRCRSGGGTCVTRIRC 618


>SB_59790| Best HMM Match : VWA (HMM E-Value=0)
          Length = 4151

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 207  RERRNPRSAVKKRSNAGVRLQCVTLRALATVRRKSD 314
            + RRNPRSA  +    GVRL  V +     +R+  D
Sbjct: 2710 KSRRNPRSAALRLKRQGVRLFAVGIGKKYNMRQLID 2745


>SB_20664| Best HMM Match : DUF1113 (HMM E-Value=0.84)
          Length = 180

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 99  SLWILGALYLGFAFSLPSLAG 37
           SLW+ G LYL  A+S   LAG
Sbjct: 94  SLWLRGILYLIMAYSWEFLAG 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,327,811
Number of Sequences: 59808
Number of extensions: 132293
Number of successful extensions: 412
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)