Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K06
         (362 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...    28   1.7  
Z77652-11|CAI70405.1|  310|Caenorhabditis elegans Hypothetical p...    27   5.3  
U80837-2|AAB37902.1|  315|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U00065-7|AAL02474.1| 1090|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U00065-6|AAL02472.1| 1051|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AF003139-10|AAB54160.3|  294|Caenorhabditis elegans Hypothetical...    27   5.3  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = +2

Query: 80  APKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSAEADYAKLLAQRKKE 220
           APKIQRL+TP  +                     A Y KLLA+  KE
Sbjct: 173 APKIQRLITPARIARKKYLLRQKRNQKIKMRDDAAAYHKLLAKYSKE 219


>Z77652-11|CAI70405.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.13 protein.
          Length = 310

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 36  YLPKRARKMQNPDTMRLKSR 95
           YL KR +KM+NP   +L++R
Sbjct: 190 YLSKRRKKMENPAMKKLRTR 209


>U80837-2|AAB37902.1|  315|Caenorhabditis elegans Hypothetical
           protein F07E5.2 protein.
          Length = 315

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 131 DVCAAEQPVLLASGF*AHCIWVLHFPCPLWQVKGVLQHSDAP 6
           D+   E   L   GF    +W+ H    L+Q KGV+   DAP
Sbjct: 91  DIRGQEPATLTKPGF-TDKLWIEHVAEVLFQNKGVILSCDAP 131


>U00065-7|AAL02474.1| 1090|Caenorhabditis elegans Hypothetical
           protein D1044.2c protein.
          Length = 1090

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 4   RGASLCCKTPFTCQRGQGKCKTQIQCA*NPEASN 105
           RG + C      CQ  Q KC T+ QCA N  + N
Sbjct: 349 RGCATCWDG-VACQTRQEKCATKTQCASNALSFN 381


>U00065-6|AAL02472.1| 1051|Caenorhabditis elegans Hypothetical
           protein D1044.2a protein.
          Length = 1051

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 4   RGASLCCKTPFTCQRGQGKCKTQIQCA*NPEASN 105
           RG + C      CQ  Q KC T+ QCA N  + N
Sbjct: 349 RGCATCWDG-VACQTRQEKCATKTQCASNALSFN 381


>AF003139-10|AAB54160.3|  294|Caenorhabditis elegans Hypothetical
           protein F53G12.4 protein.
          Length = 294

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = +2

Query: 26  KRLLPAKEGKENAKPRYNAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSAEADYA 193
           K +LP ++ KE AK     PK Q LV P+VL                  S  +DY+
Sbjct: 243 KSILPMEKKKEEAK-----PKEQELVEPLVLSEGESIDELEDFDTGLLSSGGSDYS 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,074,191
Number of Sequences: 27780
Number of extensions: 91605
Number of successful extensions: 242
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)