Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K06
         (362 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)              55   1e-08
At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...    55   1e-08

>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 35/83 (42%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
 Frame = +2

Query: 5   EVRRYV--VKRLLPAKEGKENAKPRYNAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSA 178
           +VR+YV   +R    K+GK+ +K    APKIQRLVTP+ LQ                 S 
Sbjct: 154 DVRKYVNTYRRTFTNKKGKKVSK----APKIQRLVTPLTLQRKRARIADKKKRIAKANSD 209

Query: 179 EADYAKLLAQRKKESKVRRQEEI 247
            ADY KLLA R KE + RR E +
Sbjct: 210 AADYQKLLASRLKEQRDRRSESL 232


>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 36/83 (43%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
 Frame = +2

Query: 5   EVRRYV--VKRLLPAKEGKENAKPRYNAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSA 178
           +VR YV   +R    K+GKE +K    APKIQRLVTP+ LQ                 S 
Sbjct: 154 DVRTYVNTYRRKFTNKKGKEVSK----APKIQRLVTPLTLQRKRARIADKKKKIAKANSD 209

Query: 179 EADYAKLLAQRKKESKVRRQEEI 247
            ADY KLLA R KE + RR E +
Sbjct: 210 AADYQKLLASRLKEQRDRRSESL 232


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,760,091
Number of Sequences: 28952
Number of extensions: 84901
Number of successful extensions: 178
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)