Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K05
         (403 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   0.85 
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   3.4  
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    21   3.4  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   3.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    20   7.9  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    20   7.9  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    20   7.9  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.4 bits (48), Expect = 0.85
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 104 RPPLSPAQIQKMLDENVHLIQTIQEYQAKGQLLECHQYQQVLHRNLV 244
           RPPL+  +I +   EN+     +++   KG++        VL +N V
Sbjct: 366 RPPLTREEIHEKARENLKHHANLRQKNQKGEVTVLEIEDWVLLKNKV 412


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -2

Query: 381 EPPGTSTPLDGGLEDGAC 328
           +P  T TP  G   DG C
Sbjct: 426 KPQTTKTPESGNESDGVC 443


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 332 LATRYLELIVVVAVKDFEYFD*H 264
           L  R +ELI  + VK+F+ F  H
Sbjct: 38  LLLRDVELIKQIGVKEFDSFHDH 60


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 162 YKQYKNTKRKDNFWNVINISKFYTEIW 242
           Y +Y   +RK    N + +S+   +IW
Sbjct: 177 YSRYITIRRKAELANSLGLSERQVKIW 203


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.2 bits (40), Expect = 7.9
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -1

Query: 79  GHYKCISC 56
           G YKC++C
Sbjct: 869 GEYKCVTC 876


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 20.2 bits (40), Expect = 7.9
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = +2

Query: 326 SQAPSSNPPSSGVDVPGGSQQQYRAP 403
           +  P   PPSS +   G      R+P
Sbjct: 67  ASTPDVRPPSSSLSYGGPVNDDVRSP 92


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 7.9
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = +2

Query: 326 SQAPSSNPPSSGVDVPGGSQQQYRAP 403
           +  P   PPSS +   G      R+P
Sbjct: 223 ASTPDVRPPSSSLSYGGPVNDDVRSP 248


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,600
Number of Sequences: 336
Number of extensions: 2097
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8646818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)