Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_K05
(403 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 26 1.9
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 1.9
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 26 2.5
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 26 2.5
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 2.5
SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 3.3
SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce... 25 4.4
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 25 4.4
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 25 5.8
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 25 5.8
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 5.8
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 25 5.8
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 24 7.7
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ... 24 7.7
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 26.2 bits (55), Expect = 1.9
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = +1
Query: 85 ICCSRQSTSTKPSSNTENVRRECSFDTNNTRIPSERTT 198
+C S S TKP + R E F + PS+ T
Sbjct: 221 VCDSCYSLRTKPKGSKSRARNERKFHAKTRKTPSKPVT 258
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 1.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 266 HQLQRLNTPNFCVKLADIDDIPKV 195
HQ+ RLN+PN V D +P +
Sbjct: 219 HQINRLNSPNILVVNHDASTMPNI 242
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 25.8 bits (54), Expect = 2.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 155 HLIQTIQEYQAKGQLLECHQYQQVL 229
HLI TIQEY G LL + Q ++
Sbjct: 726 HLINTIQEYTDLGVLLTTNNGQTIM 750
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 25.8 bits (54), Expect = 2.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 266 HQLQRLNTPNFCVKLADIDDIPKVVLS 186
HQ++RLN+PN + D +P LS
Sbjct: 198 HQIKRLNSPNVLIVNHDASFLPNFHLS 224
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 25.8 bits (54), Expect = 2.5
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 311 APGNVSQAPSSNPPSSGVDVPGGSQQQYRAP 403
AP NVS +PS P S VP SQ + P
Sbjct: 751 APPNVSGSPSETPISKPEKVPVVSQTEKALP 781
>SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 90
Score = 25.4 bits (53), Expect = 3.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 345 ILHPVVLMYLVAHNSN 392
IL PV+L+YLV H+ N
Sbjct: 27 ILSPVLLIYLVIHSQN 42
>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 25.0 bits (52), Expect = 4.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 151 CSFDTNNTRIPSERTTFGMSSISAS 225
C+ D +IP E+TT+ +S S
Sbjct: 37 CAVDAEGRQIPGEKTTYAISGFVRS 61
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 25.0 bits (52), Expect = 4.4
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 73 NVRSICCSRQSTSTKPSSNTENVRRECSFDTNNTRIPSERTTF 201
+++S + STS K + +EN RR FDT ++ SE+ F
Sbjct: 600 SIKSATMIKGSTSKKVAVVSENNRRLSIFDTRSSEF-SEKEEF 641
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 24.6 bits (51), Expect = 5.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 10 VLVVLVDFELII*FCRKKYIYNVRSICCSRQS 105
V+ VL +F+L + R+ +YN+ I SR++
Sbjct: 680 VIFVLEEFDLFVQHSRQMLLYNLFDIAQSRKA 711
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 24.6 bits (51), Expect = 5.8
Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 2/97 (2%)
Frame = +2
Query: 110 PLSPAQIQKMLDENVHLIQTIQEYQAKGQLLECHQYQQV--LHRNLVYLASVADAXXXXX 283
P SP LD + T+ G L + +H+N + ++++
Sbjct: 254 PRSPNSFSSPLDNPA--LHTVDSTNVNGSLSPLSNSSSINQVHQNETHGSTISVPNPNLS 311
Query: 284 XXXXXXXXXAPGNVSQAPSSNPPSSGVDVPGGSQQQY 394
P N+S P+ N S +P + Q +
Sbjct: 312 QMGPSHSSSVPSNLSPNPAQNENPSTTSIPSINNQPF 348
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 24.6 bits (51), Expect = 5.8
Identities = 22/97 (22%), Positives = 39/97 (40%)
Frame = +1
Query: 64 YIYNVRSICCSRQSTSTKPSSNTENVRRECSFDTNNTRIPSERTTFGMSSISASFTQKFG 243
Y YN S S ++S+ SS+ + S TN+T S ++ SS + S +
Sbjct: 63 YNYNTSSASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASS 122
Query: 244 VFXXXXXXXXXXXXXFTATTTISSR*RVASTVF*SSI 354
A+++I+S +S+ SS+
Sbjct: 123 STTSSSLASSSITSSSLASSSITSSSLASSSTTSSSL 159
Score = 24.2 bits (50), Expect = 7.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 314 PGNVSQAPSSNPPSSGVDVPGGS 382
PGN S + S+ P +S PGGS
Sbjct: 889 PGNPSSSVSAPPTTSFTPGPGGS 911
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 24.6 bits (51), Expect = 5.8
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -3
Query: 260 LQRLNTPNFCVKLADIDDIPKVVLSLGILVLFVSNEHSRLTFSVFELGLVEV 105
L+RL T KL D+ + ++ +VLF + L FEL LVEV
Sbjct: 711 LERLKTWKLLFKLLPNDEFHLLPSAIAEVVLFSKHHDDDLRAMAFEL-LVEV 761
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 24.2 bits (50), Expect = 7.7
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +1
Query: 64 YIYNVRSICCSRQSTSTKPSSNTENVRRECSFDT 165
++ + C SR+S T+ + EN+R++ + T
Sbjct: 430 HLLEMGEACTSRESQKTRKKNLKENIRKQRTTST 463
>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 481
Score = 24.2 bits (50), Expect = 7.7
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = +2
Query: 101 NRPPLSPAQIQKMLDENVHLIQTIQEYQAK 190
N P +++ LD+ +H +Q Y++K
Sbjct: 289 NHVPSVLTELRSGLDQTIHYFNAVQSYKSK 318
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,652,974
Number of Sequences: 5004
Number of extensions: 31995
Number of successful extensions: 116
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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