Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_K05
(403 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0390 - 23060034-23060399,23060486-23060573,23061767-230618... 59 1e-09
12_02_0417 - 18896949-18897269,18897340-18897424,18899561-188996... 50 9e-07
03_05_1030 - 29844628-29845059,29845161-29845245,29845989-298460... 42 2e-04
07_01_0204 + 1476517-1477047 29 1.0
01_06_1476 + 37640278-37642551 29 1.4
10_08_0500 - 18357828-18358649 28 2.4
10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314 28 2.4
02_05_0970 - 33179180-33179210,33179297-33179441,33180307-331803... 27 4.2
12_02_0803 + 23318429-23318552,23318688-23319877,23320724-233215... 27 5.6
10_05_0104 + 9190779-9191847,9192544-9193332,9193652-9194049 27 5.6
05_03_0079 + 8212648-8212724,8212844-8212993,8213211-8213351,821... 27 5.6
03_05_1050 - 29966031-29966076,29966180-29966232,29966420-299668... 27 5.6
01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311 27 5.6
01_05_0790 + 25253363-25254136,25259037-25259897 27 5.6
09_06_0197 - 21494520-21494807,21494871-21495018,21495342-21495394 27 7.3
04_03_0874 + 20467608-20468306,20468575-20468736,20470083-204701... 27 7.3
03_05_0441 + 24350026-24350081,24350186-24351011,24351088-243511... 27 7.3
03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,588... 27 7.3
10_08_0928 + 21617977-21618157,21618260-21618378,21618653-216187... 26 9.7
04_04_0965 - 29762388-29762564,29764272-29766361,29766567-297671... 26 9.7
03_05_0519 - 25131614-25134778 26 9.7
01_07_0145 + 41449629-41449698,41449785-41449873,41451842-41452255 26 9.7
>11_06_0390 -
23060034-23060399,23060486-23060573,23061767-23061843,
23062971-23063057
Length = 205
Score = 58.8 bits (136), Expect = 1e-09
Identities = 29/52 (55%), Positives = 36/52 (69%)
Frame = +2
Query: 113 LSPAQIQKMLDENVHLIQTIQEYQAKGQLLECHQYQQVLHRNLVYLASVADA 268
++ QIQK LDEN LI I E Q G+L EC QYQ L +NL+YLA++ADA
Sbjct: 22 ITTEQIQKYLDENKQLILAILENQNLGKLAECAQYQAQLQKNLLYLAAIADA 73
>12_02_0417 -
18896949-18897269,18897340-18897424,18899561-18899656,
18900418-18900476,18901285-18901359
Length = 211
Score = 49.6 bits (113), Expect = 9e-07
Identities = 24/42 (57%), Positives = 29/42 (69%)
Frame = +2
Query: 140 LDENVHLIQTIQEYQAKGQLLECHQYQQVLHRNLVYLASVAD 265
LDEN LI I E Q G+L EC QYQ L +NL+YLA++AD
Sbjct: 53 LDENKQLILAILENQNLGKLAECAQYQAQLQKNLLYLAAIAD 94
>03_05_1030 -
29844628-29845059,29845161-29845245,29845989-29846087,
29846478-29846566,29847583-29847633
Length = 251
Score = 41.5 bits (93), Expect = 2e-04
Identities = 20/43 (46%), Positives = 28/43 (65%)
Frame = +2
Query: 140 LDENVHLIQTIQEYQAKGQLLECHQYQQVLHRNLVYLASVADA 268
LDEN LI I + Q G++ EC + Q L NL+YLA++AD+
Sbjct: 56 LDENKQLILAILDNQNNGKVEECARNQAKLQHNLMYLAAIADS 98
>07_01_0204 + 1476517-1477047
Length = 176
Score = 29.5 bits (63), Expect = 1.0
Identities = 18/78 (23%), Positives = 30/78 (38%)
Frame = +2
Query: 89 AVRGNRPPLSPAQIQKMLDENVHLIQTIQEYQAKGQLLECHQYQQVLHRNLVYLASVADA 268
A G+ + A + K ++E + + +G LLEC Y QV+ R+ + + A
Sbjct: 93 AAAGSSAATAAAAVSKWMEEKADYVYSSNTC-TRGALLECGHYTQVVWRSTTSIGCASAA 151
Query: 269 XXXXXXXXXXXXXXAPGN 322
PGN
Sbjct: 152 CSNGGGVIISCNYSPPGN 169
>01_06_1476 + 37640278-37642551
Length = 757
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 85 ICCSRQSTSTKPSSNTENVRRECSFDTNNTRIPSERTTFGMSSIS 219
+ CS T+ + + T + CSF TN+ PS FG + S
Sbjct: 627 LLCSTNFTAAQIMAITRSKAYNCSFSTNDMNYPSFIAVFGANDTS 671
>10_08_0500 - 18357828-18358649
Length = 273
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 378 PPGTSTPLDGGLEDGACDTLPGANCCGGGKRF 283
PP +T GG A P ANC GGG ++
Sbjct: 226 PPQAATGDVGGAVGAASTAAPDANCGGGGVQY 257
>10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314
Length = 1056
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 152 VHLIQTIQEYQAKGQLLECHQYQQVLHRNLVYLASVADA 268
V ++ Q A+ + EC+ +++ HRNLV + +V D+
Sbjct: 752 VKVLDLHQTRAARSFMSECNALKRIRHRNLVRIITVCDS 790
>02_05_0970 -
33179180-33179210,33179297-33179441,33180307-33180362,
33180650-33180691,33180814-33180866,33181059-33181490,
33181630-33181707,33181785-33181870,33183588-33183689,
33183754-33183960,33184976-33185336,33185463-33185626,
33185709-33185817,33186468-33186485
Length = 627
Score = 27.5 bits (58), Expect = 4.2
Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = +2
Query: 314 PGNVSQ--APSSNPPSSGVDVPGGS 382
PG+ SQ A S PSSGV PGGS
Sbjct: 57 PGSFSQRNAAMSGLPSSGVQQPGGS 81
>12_02_0803 +
23318429-23318552,23318688-23319877,23320724-23321528,
23321938-23322417,23322535-23322815,23323207-23323302,
23323423-23323548,23324100-23325890
Length = 1630
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 145 RECSFDTNNTRIPSERTTFGMSSISA 222
++ SF T TR+P E+ F SSI A
Sbjct: 230 KDSSFPTGQTRLPLEKIGFEASSIGA 255
>10_05_0104 + 9190779-9191847,9192544-9193332,9193652-9194049
Length = 751
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 173 QEYQAKGQLLECHQYQQVLHRNLVYLASVADA 268
Q+ Q +G EC +++ HR LV + +V D+
Sbjct: 472 QKGQTQGFFAECDALRRIQHRKLVKVVTVCDS 503
>05_03_0079 +
8212648-8212724,8212844-8212993,8213211-8213351,
8213658-8213820,8213901-8214094,8214174-8214369,
8214462-8214539,8214933-8215162,8215574-8215688,
8215878-8215952,8216032-8216172,8216309-8216512,
8216586-8216747,8216787-8216794,8217099-8217223,
8217316-8217438,8218177-8218307,8218527-8218658
Length = 814
Score = 27.1 bits (57), Expect = 5.6
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = -1
Query: 79 GHYKCISCGRIILLTQNQLKLRERLV 2
G +KC+ CG ++ + Q K E ++
Sbjct: 155 GTFKCLDCGNVVKNVEQQFKYTEPII 180
>03_05_1050 -
29966031-29966076,29966180-29966232,29966420-29966845,
29966983-29967060,29967135-29967220,29969054-29969155,
29969221-29969427,29970528-29970885,29971011-29971174,
29971258-29971366,29971595-29971600
Length = 544
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +2
Query: 314 PGNVSQ--APSSNPPSSGVDVPGGS 382
PG+++Q A S PSSGV PGGS
Sbjct: 53 PGSLAQRNAAMSGLPSSGVQQPGGS 77
>01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311
Length = 705
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -2
Query: 390 CCCEPPGTSTPLDGGLEDGACDTLPGANCCGGGK 289
C C PPG +D G G C GA C GG+
Sbjct: 310 CLC-PPGFDL-IDAGDAAGGCTASSGAGECTGGR 341
>01_05_0790 + 25253363-25254136,25259037-25259897
Length = 544
Score = 27.1 bits (57), Expect = 5.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 62 FLRQNYIINSKSTKTTRTPR 3
+ ++ Y++N +STKT R PR
Sbjct: 256 YCKEVYVVNRESTKTARLPR 275
>09_06_0197 - 21494520-21494807,21494871-21495018,21495342-21495394
Length = 162
Score = 26.6 bits (56), Expect = 7.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 197 VVLSLGILVLFVSNEHSRLT 138
V+LSLG+LVL + H R++
Sbjct: 87 VILSLGVLVLLFTRRHGRIS 106
>04_03_0874 +
20467608-20468306,20468575-20468736,20470083-20470160,
20470636-20470714,20470809-20470954,20471064-20471132,
20471262-20471430,20471526-20471776
Length = 550
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 115 KPSSNTENVRRECSFDTNNTRIPSER 192
KPSS +RR S +NN RI S R
Sbjct: 160 KPSSGNNGLRRMGSGSSNNARIGSSR 185
>03_05_0441 +
24350026-24350081,24350186-24351011,24351088-24351189,
24351278-24351343,24351418-24351483,24351594-24351800,
24351925-24352086
Length = 494
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 79 RSICCSRQSTSTKPSSNTENVRRECSFD-TNNTRIPSE 189
RS CC +T+T+P+S + + D T ++ PSE
Sbjct: 257 RSNCCFGTTTTTEPTSTSNRSSKRKRLDTTEDSESPSE 294
>03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,
5882570-5882618,5882703-5882941,5883073-5883174,
5883634-5883862
Length = 1529
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 314 PGNVSQAPSSNPPSSGVDVPGGSQQQ 391
P SQ PS PPS G+ V ++QQ
Sbjct: 1169 PSIPSQFPSREPPSQGMAVAAQTEQQ 1194
>10_08_0928 +
21617977-21618157,21618260-21618378,21618653-21618774,
21618853-21619049,21619350-21619603,21619779-21619880,
21619976-21620404,21620611-21621369,21621586-21621771
Length = 782
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +2
Query: 104 RPPLSPAQIQKMLDENVHLIQTIQEYQAKGQLLECHQYQQV 226
+PP+ A + + EN HL+ + + K E H+ Q+
Sbjct: 627 KPPVGLADLVEQAVENGHLVDILDKSAGKWPAQEAHELAQL 667
>04_04_0965 -
29762388-29762564,29764272-29766361,29766567-29767170,
29768395-29768637,29768704-29770203
Length = 1537
Score = 26.2 bits (55), Expect = 9.7
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 10/47 (21%)
Frame = -2
Query: 384 CEPPGTSTPLDGG-------LEDGAC---DTLPGANCCGGGKRF*IF 274
C PP + ++GG G C +TL G +C GGG+R +F
Sbjct: 48 CVPPPETLGVEGGGTRTLAYASGGVCLPPETLGGVSCGGGGERTLVF 94
>03_05_0519 - 25131614-25134778
Length = 1054
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 59 RNTFIMSVAFAVRGNRPPLSPAQIQKMLDENVH 157
R+T + V+ + + PPL P +Q +LD + H
Sbjct: 809 RHTAMRIVSGRLARSEPPLGPEVVQYLLDTDTH 841
>01_07_0145 + 41449629-41449698,41449785-41449873,41451842-41452255
Length = 190
Score = 26.2 bits (55), Expect = 9.7
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +1
Query: 64 YIYNVRSICCSRQSTSTKPSSNTENVRREC 153
Y+Y V + +T PSS++ + R+C
Sbjct: 116 YLYMVTDVAIQAVGPTTSPSSSSSMIHRQC 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,737,546
Number of Sequences: 37544
Number of extensions: 206938
Number of successful extensions: 697
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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