Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_K05
(403 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0) 32 0.20
SB_25260| Best HMM Match : PqiA (HMM E-Value=0.3) 31 0.46
SB_38612| Best HMM Match : TSP_1 (HMM E-Value=3.3e-11) 27 4.3
SB_43001| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_17360| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-26) 27 7.6
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0) 27 7.6
SB_39229| Best HMM Match : Phage_holin_1 (HMM E-Value=3.5) 26 10.0
SB_10487| Best HMM Match : FGF (HMM E-Value=1.4e-06) 26 10.0
SB_59407| Best HMM Match : Toxin_4 (HMM E-Value=4.4) 26 10.0
SB_48913| Best HMM Match : TSP_1 (HMM E-Value=1.8e-11) 26 10.0
SB_20563| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 10.0
>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
Length = 2276
Score = 31.9 bits (69), Expect = 0.20
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 110 PLSPAQIQKMLDENVHLIQTIQEYQAKGQLLECHQYQQ 223
P AQ+ ++L +N HLIQ + + + QLL+ Q QQ
Sbjct: 1840 PQQQAQVVQILKKNPHLIQAFMKQKHQQQLLQQQQQQQ 1877
>SB_25260| Best HMM Match : PqiA (HMM E-Value=0.3)
Length = 365
Score = 30.7 bits (66), Expect = 0.46
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Frame = -3
Query: 230 VKLADIDDIPKVVLSL-GILVLFVSNEHSRLTFSVFELGLVE--VDCLEQQMLRTL*MYF 60
VKL+ ++ + + +L G+ + FV+N + T S ++G V L L+TL Y
Sbjct: 199 VKLSRLNKLTFGIGTLSGVSMTFVANFEIQKTVSFHDVGAVSGFSGALVYCWLQTLMSYR 258
Query: 59 LRQNYIINSKSTKTTRT 9
LR + +INS + TRT
Sbjct: 259 LRDHGVINSTAVCHTRT 275
>SB_38612| Best HMM Match : TSP_1 (HMM E-Value=3.3e-11)
Length = 900
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -2
Query: 384 CEPPGTSTPLDGGLEDGACDTLPGANCCGGG 292
C G S P++GG D D + CGGG
Sbjct: 353 CVDDGLSGPINGGWSDWPADYSTCSYTCGGG 383
>SB_43001| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 26.6 bits (56), Expect = 7.6
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -3
Query: 227 KLADIDDIPKVVLSLGIL-VLFVSNEHSRLTFSVF 126
+LA+IDD K+ + LG+L L + H R+ F V+
Sbjct: 56 QLAEIDDDKKIEVYLGVLGPLGTRHAHGRIYFIVY 90
>SB_17360| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-26)
Length = 715
Score = 26.6 bits (56), Expect = 7.6
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -1
Query: 397 SVLLL*ATRYINTTGWRIRRRCLRHVTWS*LLWWR*KILNILISISYRG 251
SV L +I W + RRCLR + WR + LN ++ RG
Sbjct: 653 SVALQITKHFIKMVVWEVLRRCLRGRQHCDVGVWRREFLNAREVVARRG 701
>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1706
Score = 26.6 bits (56), Expect = 7.6
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -2
Query: 402 GARYCCCEPPGTSTPLDGGLEDGACDTLPG 313
G + C C+P G++ P G C PG
Sbjct: 734 GTKVCECDPEGSTNPTQCVAYGGQCPCKPG 763
>SB_39229| Best HMM Match : Phage_holin_1 (HMM E-Value=3.5)
Length = 636
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 52 CRKKYIYNVRSICCSRQSTSTKPSSNTENVRRECS 156
CR IY+ RSI S Q+TS + ++C+
Sbjct: 248 CRSCCIYSSRSIANSGQTTSVATQTEAARESKDCN 282
>SB_10487| Best HMM Match : FGF (HMM E-Value=1.4e-06)
Length = 617
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -2
Query: 384 CEPPGTSTPLDGGLEDGACDTLPGANCCGG 295
C+PP + P + DG D G +C GG
Sbjct: 507 CKPPKRTFPGQTAVHDGGGDDGDGIDCDGG 536
>SB_59407| Best HMM Match : Toxin_4 (HMM E-Value=4.4)
Length = 49
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 384 CEPPGTSTPLDGGLEDGACDTLPGANCCGGG 292
C G S P++GG + + D + CGGG
Sbjct: 7 CVDDGLSGPINGGWSNWSADYSTCSYTCGGG 37
>SB_48913| Best HMM Match : TSP_1 (HMM E-Value=1.8e-11)
Length = 1068
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 384 CEPPGTSTPLDGGLEDGACDTLPGANCCGGG 292
C G S P++GG + + D + CGGG
Sbjct: 416 CVDDGLSGPINGGWSNWSADYSTCSYTCGGG 446
>SB_20563| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -2
Query: 375 PGTSTPLDGGLEDGACDTLPGA 310
PG PLD GLED L GA
Sbjct: 84 PGLKLPLDSGLEDDLDSDLGGA 105
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,442,087
Number of Sequences: 59808
Number of extensions: 243672
Number of successful extensions: 851
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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